RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 LPAR2Q9HBW0 351 aa10.3□□□□□ -0.76
SHMT1-205ENST00000395684 RAI1Q7Z5J4 1906 aaPredicted RBP10.3□□□□□ -0.76
SHMT1-205ENST00000395684 IZUMO1RA6ND01 250 aa10.3□□□□□ -0.76
SHMT1-205ENST00000395684 TM4SF5O14894 197 aa10.3□□□□□ -0.76
SHMT1-205ENST00000395684 APCSP02743 223 aa10.3□□□□□ -0.76
SHMT1-205ENST00000395684 ZNF833PQ6ZTB9 187 aa10.3□□□□□ -0.76
SHMT1-205ENST00000395684 OR4B1Q8NGF8 309 aa10.3□□□□□ -0.76
SHMT1-205ENST00000395684 TSKUQ8WUA8 353 aa10.3□□□□□ -0.76
SHMT1-205ENST00000395684 ARFGEF3Q5TH69 2177 aa10.29□□□□□ -0.76
SHMT1-205ENST00000395684 IGHV3-48P01763 117 aa10.29□□□□□ -0.76
SHMT1-205ENST00000395684 NPSP0C0P6 89 aa10.29□□□□□ -0.76
SHMT1-205ENST00000395684 C3orf79P0CE67 100 aa10.29□□□□□ -0.76
SHMT1-205ENST00000395684 CACNG8Q8WXS5 425 aa10.29□□□□□ -0.76
SHMT1-205ENST00000395684 HARBI1Q96MB7 349 aa10.29□□□□□ -0.76
SHMT1-205ENST00000395684 MRPL32Q9BYC8 188 aaKnown RBP10.29□□□□□ -0.76
SHMT1-205ENST00000395684 COMMD5Q9GZQ3 224 aa10.29□□□□□ -0.76
SHMT1-205ENST00000395684 FNDC4Q9H6D8 234 aaPredicted RBP10.29□□□□□ -0.76
SHMT1-205ENST00000395684 AMMECR1Q9Y4X0 333 aaPredicted RBP10.29□□□□□ -0.76
SHMT1-205ENST00000395684 FAM215AQ9Y5M1 114 aa10.29□□□□□ -0.76
SHMT1-205ENST00000395684 TRAV34A0A0B4J273 112 aa10.29□□□□□ -0.76
SHMT1-205ENST00000395684 DLL1O00548 723 aa10.29□□□□□ -0.76
SHMT1-205ENST00000395684 USF1P22415 310 aaPredicted RBP10.29□□□□□ -0.76
SHMT1-205ENST00000395684 REG1BP48304 166 aa10.29□□□□□ -0.76
SHMT1-205ENST00000395684 DEFB109BQ30KR1 87 aa10.29□□□□□ -0.76
SHMT1-205ENST00000395684 SPATA45Q537H7 98 aa10.29□□□□□ -0.76
SHMT1-205ENST00000395684 PATE2Q6UY27 113 aa10.29□□□□□ -0.76
SHMT1-205ENST00000395684 OSR1Q8TAX0 266 aaPredicted RBP10.29□□□□□ -0.76
SHMT1-205ENST00000395684 ASCL3Q9NQ33 180 aa10.29□□□□□ -0.76
SHMT1-205ENST00000395684 ZNF355PQ9NSJ1 428 aa10.29□□□□□ -0.76
SHMT1-205ENST00000395684 PTPRZ1P23471 2315 aaPredicted RBP10.28□□□□□ -0.76
SHMT1-205ENST00000395684 H0YJW9 148 aa10.28□□□□□ -0.76
SHMT1-205ENST00000395684 PRRX1P54821 245 aa10.28□□□□□ -0.76
SHMT1-205ENST00000395684 RPL8P62917 257 aaKnown RBP10.28□□□□□ -0.76
SHMT1-205ENST00000395684 WT1-ASQ06250 92 aa10.28□□□□□ -0.76
SHMT1-205ENST00000395684 GDF5OSQ5U4N7 250 aa10.28□□□□□ -0.76
SHMT1-205ENST00000395684 MBD6Q96DN6 1003 aa10.28□□□□□ -0.76
SHMT1-205ENST00000395684 GOLT1BQ9Y3E0 138 aa10.28□□□□□ -0.76
SHMT1-205ENST00000395684 hADV38S2A0JD32 116 aa10.28□□□□□ -0.76
SHMT1-205ENST00000395684 CGB1A6NKQ9 187 aa10.28□□□□□ -0.76
SHMT1-205ENST00000395684 CCL3L1P16619 93 aa10.28□□□□□ -0.76
SHMT1-205ENST00000395684 TFPI2P48307 235 aa10.28□□□□□ -0.76
SHMT1-205ENST00000395684 ERHP84090 104 aaKnown RBP10.28□□□□□ -0.76
SHMT1-205ENST00000395684 C10orf55Q5SWW7 151 aa10.28□□□□□ -0.76
SHMT1-205ENST00000395684 SPACA3Q8IXA5 215 aa10.28□□□□□ -0.76
SHMT1-205ENST00000395684 C18orf32Q8TCD1 76 aa10.28□□□□□ -0.76
SHMT1-205ENST00000395684 ZNF714Q96N38 554 aa10.28□□□□□ -0.76
SHMT1-205ENST00000395684 WNT10AQ9GZT5 417 aa10.28□□□□□ -0.76
SHMT1-205ENST00000395684 ZNF331Q9NQX6 463 aaPredicted RBP10.28□□□□□ -0.76
SHMT1-205ENST00000395684 FCN3O75636 299 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 FSTL3O95633 263 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 FAM27E3Q08E93 113 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 DIAPH2-AS1Q14236 149 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 MMDQ15546 238 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 TEX36Q5VZQ5 186 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 ZNF329Q86UD4 541 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 OR5AN1Q8NGI8 311 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 NPIPB3Q92617 1050 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 PAXXQ9BUH6 204 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 MRPL36Q9P0J6 103 aaKnown RBP10.27□□□□□ -0.77
SHMT1-205ENST00000395684 LINC00312Q9Y6C7 94 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 CNOT1A5YKK6 2376 aaKnown RBP10.27□□□□□ -0.77
SHMT1-205ENST00000395684 IGKV1D-37A0A075B6S9 117 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 DPRXA6NFQ7 191 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 REG1AP05451 166 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 NTF3P20783 257 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 SELENOVP59797 346 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 CCL8P80075 99 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 GAGE1Q13065 139 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 NUP35Q8NFH5 326 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 NUDT10Q8NFP7 164 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 NUDT11Q96G61 164 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 PPIAL4AQ9Y536 164 aa10.27□□□□□ -0.77
SHMT1-205ENST00000395684 COX7A2P2O60397 106 aa10.26□□□□□ -0.77
SHMT1-205ENST00000395684 MFAP2P55001 183 aa10.26□□□□□ -0.77
SHMT1-205ENST00000395684 TMEM30BQ3MIR4 351 aa10.26□□□□□ -0.77
SHMT1-205ENST00000395684 C3orf36Q3SXR2 165 aa10.26□□□□□ -0.77
SHMT1-205ENST00000395684 C10orf113Q5VZT2 155 aa10.26□□□□□ -0.77
SHMT1-205ENST00000395684 ZCCHC24Q8N2G6 241 aaKnown RBP10.26□□□□□ -0.77
SHMT1-205ENST00000395684 WIPF2Q8TF74 440 aaPredicted RBP10.26□□□□□ -0.77
SHMT1-205ENST00000395684 FLYWCH2Q96CP2 140 aaKnown RBP10.26□□□□□ -0.77
SHMT1-205ENST00000395684 DYSFO75923 2080 aa10.26□□□□□ -0.77
SHMT1-205ENST00000395684 PEX7O00628 323 aa10.26□□□□□ -0.77
SHMT1-205ENST00000395684 HYPMO75409 117 aa10.26□□□□□ -0.77
SHMT1-205ENST00000395684 APOA2P02652 100 aa10.26□□□□□ -0.77
SHMT1-205ENST00000395684 IGLC2P0DOY2 106 aa10.26□□□□□ -0.77
SHMT1-205ENST00000395684 IGLC3P0DOY3 106 aa10.26□□□□□ -0.77
SHMT1-205ENST00000395684 TBR1Q16650 682 aa10.26□□□□□ -0.77
SHMT1-205ENST00000395684 TMEM177Q53S58 311 aa10.26□□□□□ -0.77
SHMT1-205ENST00000395684 ZNF841Q6ZN19 808 aa10.26□□□□□ -0.77
SHMT1-205ENST00000395684 FAM231DQ6ZW35 169 aa10.26□□□□□ -0.77
SHMT1-205ENST00000395684 FXYD5Q96DB9 178 aa10.26□□□□□ -0.77
SHMT1-205ENST00000395684 ZNF292O60281 2723 aa10.26□□□□□ -0.77
SHMT1-205ENST00000395684 RP1L1Q8IWN7 2480 aaPredicted RBP10.26□□□□□ -0.77
SHMT1-205ENST00000395684 SPAARA0A1B0GVQ0 90 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 VWC2LB2RUY7 222 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 INS-IGF2F8WCM5 200 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 PLAUP00749 431 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 GNG5P63218 68 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 TNXAQ16473 311 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 MAJINQ3KP22 176 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms