RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 FUT9Q9Y231 359 aa12.05□□□□□ -0.48
GPC3-202ENST00000394299 VENTXO95231 258 aa12.04□□□□□ -0.48
GPC3-202ENST00000394299 HNF1AP20823 631 aa12.04□□□□□ -0.48
GPC3-202ENST00000394299 GPX4P36969 197 aaPredicted RBP12.04□□□□□ -0.48
GPC3-202ENST00000394299 COMPP49747 757 aaPredicted RBP12.04□□□□□ -0.48
GPC3-202ENST00000394299 RND2P52198 227 aa12.04□□□□□ -0.48
GPC3-202ENST00000394299 ATP5IP56385 69 aaPredicted RBP12.04□□□□□ -0.48
GPC3-202ENST00000394299 SSX2Q16385 188 aa12.04□□□□□ -0.48
GPC3-202ENST00000394299 UHRF2Q96PU4 802 aa12.04□□□□□ -0.48
GPC3-202ENST00000394299 DMRT1Q9Y5R6 373 aa12.04□□□□□ -0.48
GPC3-202ENST00000394299 TRBV20OR9-2A0A075B6H5 130 aa12.04□□□□□ -0.48
GPC3-202ENST00000394299 A6NNC1 897 aa12.04□□□□□ -0.48
GPC3-202ENST00000394299 CLDN34H7C241 214 aa12.04□□□□□ -0.48
GPC3-202ENST00000394299 PRTN3P24158 256 aa12.04□□□□□ -0.48
GPC3-202ENST00000394299 MEOX2P50222 304 aa12.04□□□□□ -0.48
GPC3-202ENST00000394299 PLGLAQ15195 96 aa12.04□□□□□ -0.48
GPC3-202ENST00000394299 VMO1Q7Z5L0 202 aa12.04□□□□□ -0.48
GPC3-202ENST00000394299 OR11H6Q8NGC7 330 aa12.04□□□□□ -0.48
GPC3-202ENST00000394299 BIN3Q9NQY0 253 aa12.04□□□□□ -0.48
GPC3-202ENST00000394299 AMMECR1Q9Y4X0 333 aaPredicted RBP12.04□□□□□ -0.48
GPC3-202ENST00000394299 CSMD2Q7Z408 3487 aa12.03□□□□□ -0.48
GPC3-202ENST00000394299 TEX22C9J3V5 150 aa12.03□□□□□ -0.48
GPC3-202ENST00000394299 MOSP00540 346 aa12.03□□□□□ -0.48
GPC3-202ENST00000394299 SUB1P53999 127 aaKnown RBP eCLIP12.03□□□□□ -0.48
GPC3-202ENST00000394299 MMDQ15546 238 aa12.03□□□□□ -0.48
GPC3-202ENST00000394299 FAM103A1Q9BTL3 118 aaKnown RBP12.03□□□□□ -0.48
GPC3-202ENST00000394299 ELOVL1Q9BW60 279 aa12.03□□□□□ -0.48
GPC3-202ENST00000394299 SPG11Q96JI7 2443 aa12.03□□□□□ -0.48
GPC3-202ENST00000394299 OR7C2O60412 319 aa12.03□□□□□ -0.48
GPC3-202ENST00000394299 RNF224P0DH78 156 aa12.03□□□□□ -0.48
GPC3-202ENST00000394299 PATE2Q6UY27 113 aa12.03□□□□□ -0.48
GPC3-202ENST00000394299 RNASEH2CQ8TDP1 164 aaKnown RBP12.03□□□□□ -0.48
GPC3-202ENST00000394299 CFHR4Q92496 578 aa12.03□□□□□ -0.48
GPC3-202ENST00000394299 BPESC1Q9GZL8 116 aa12.03□□□□□ -0.48
GPC3-202ENST00000394299 USP9XQ93008 2570 aaPredicted RBP12.02□□□□□ -0.49
GPC3-202ENST00000394299 PSMB11A5LHX3 300 aa12.02□□□□□ -0.49
GPC3-202ENST00000394299 CXorf65A6NEN9 183 aa12.02□□□□□ -0.49
GPC3-202ENST00000394299 PDE6DO43924 150 aa12.02□□□□□ -0.49
GPC3-202ENST00000394299 SRSF12Q8WXF0 261 aaKnown RBP12.02□□□□□ -0.49
GPC3-202ENST00000394299 LINC00587B1AMM8 73 aa12.01□□□□□ -0.49
GPC3-202ENST00000394299 EFNA4P52798 201 aa12.01□□□□□ -0.49
GPC3-202ENST00000394299 HES1Q14469 280 aa12.01□□□□□ -0.49
GPC3-202ENST00000394299 MALSU1Q96EH3 234 aa12.01□□□□□ -0.49
GPC3-202ENST00000394299 LPAR2Q9HBW0 351 aa12.01□□□□□ -0.49
GPC3-202ENST00000394299 ODF3BA8MYP8 253 aa12.01□□□□□ -0.49
GPC3-202ENST00000394299 M0R1W7 72 aa12.01□□□□□ -0.49
GPC3-202ENST00000394299 NANPQ8TBE9 248 aa12.01□□□□□ -0.49
GPC3-202ENST00000394299 CNIH1O95406 144 aa12□□□□□ -0.49
GPC3-202ENST00000394299 IGHV2-5P01817 119 aa12□□□□□ -0.49
GPC3-202ENST00000394299 TRGC2P03986 189 aa12□□□□□ -0.49
GPC3-202ENST00000394299 OR5G3P0C626 314 aa12□□□□□ -0.49
GPC3-202ENST00000394299 LINC01551Q86U37 167 aa12□□□□□ -0.49
GPC3-202ENST00000394299 FAM210BQ96KR6 192 aa12□□□□□ -0.49
GPC3-202ENST00000394299 DNAJC4Q9NNZ3 241 aa12□□□□□ -0.49
GPC3-202ENST00000394299 TMEM242Q9NWH2 141 aa12□□□□□ -0.49
GPC3-202ENST00000394299 TECRQ9NZ01 308 aaKnown RBP12□□□□□ -0.49
GPC3-202ENST00000394299 TCRBV4S1A1TA0A5B7 111 aa12□□□□□ -0.49
GPC3-202ENST00000394299 CLN5O75503 358 aa12□□□□□ -0.49
GPC3-202ENST00000394299 PRB1P04280 392 aa12□□□□□ -0.49
GPC3-202ENST00000394299 S100A6P06703 90 aa12□□□□□ -0.49
GPC3-202ENST00000394299 PYYP10082 97 aa12□□□□□ -0.49
GPC3-202ENST00000394299 FAM209BQ5JX69 171 aa12□□□□□ -0.49
GPC3-202ENST00000394299 OR4X1Q8NH49 305 aa12□□□□□ -0.49
GPC3-202ENST00000394299 EAF1Q96JC9 268 aaPredicted RBP12□□□□□ -0.49
GPC3-202ENST00000394299 CELSR2Q9HCU4 2923 aa12□□□□□ -0.49
GPC3-202ENST00000394299 C5orf52A6NGY3 159 aa11.99□□□□□ -0.49
GPC3-202ENST00000394299 MT-CO2P00403 227 aa11.99□□□□□ -0.49
GPC3-202ENST00000394299 FAM167A-AS1Q96KT0 104 aa11.99□□□□□ -0.49
GPC3-202ENST00000394299 SLC25A2Q9BXI2 301 aa11.99□□□□□ -0.49
GPC3-202ENST00000394299 CRYGCP07315 174 aa11.99□□□□□ -0.49
GPC3-202ENST00000394299 PFN1P07737 140 aaKnown RBP11.99□□□□□ -0.49
GPC3-202ENST00000394299 HOXB4P17483 251 aaPredicted RBP11.99□□□□□ -0.49
GPC3-202ENST00000394299 ORM2P19652 201 aa11.99□□□□□ -0.49
GPC3-202ENST00000394299 PAX2Q02962 417 aa11.99□□□□□ -0.49
GPC3-202ENST00000394299 KLF17Q5JT82 389 aaPredicted RBP11.99□□□□□ -0.49
GPC3-202ENST00000394299 OCC1Q8TAD7 63 aa11.99□□□□□ -0.49
GPC3-202ENST00000394299 WNT10AQ9GZT5 417 aa11.99□□□□□ -0.49
GPC3-202ENST00000394299 TNFRSF19Q9NS68 423 aa11.99□□□□□ -0.49
GPC3-202ENST00000394299 USP24Q9UPU5 2620 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 F6UZH7 168 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 H7BYZ3 331 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 C8orf88P0DMB2 117 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 CRYBB3P26998 211 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 LMO4P61968 165 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 FABP9Q0Z7S8 132 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 THAP8Q8NA92 274 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 CTDSP1Q9GZU7 261 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 ZNF355PQ9NSJ1 428 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 F11RQ9Y624 299 aaKnown RBP11.98□□□□□ -0.49
GPC3-202ENST00000394299 S4R3C0 116 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 NBR2O15453 112 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 COX7A2P2O60397 106 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 IGHV4-39P01824 125 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 GALR1P47211 349 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 SUMO1P63165 101 aaKnown RBP11.98□□□□□ -0.49
GPC3-202ENST00000394299 PVRIGQ6DKI7 326 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 OR5AU1Q8NGC0 362 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 OR1P1Q8NH06 330 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 SIRPDQ9H106 197 aa11.98□□□□□ -0.49
GPC3-202ENST00000394299 GGTLC3B5MD39 225 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms