RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 ISLRO14498 428 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 MT-CO2P00403 227 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 APCSP02743 223 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 GNLYP22749 145 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 LGALS7P47929 136 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 ERVK11-1P61568 191 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 ZNF816Q0VGE8 651 aaPredicted RBP9.13□□□□□ -0.95
CUX1-204ENST00000393824 MPV17L2Q567V2 206 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 OR4A47Q6IF82 309 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 FAM71F2Q6NXP2 309 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 H2BFWTQ7Z2G1 175 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 GGTLC1Q9BX51 225 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 POLDIP2Q9Y2S7 368 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 A0A1B0GV72 72 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 HELTA6NFD8 242 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 SPINK4O60575 86 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 GNG4P50150 75 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 ZNF146Q15072 292 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 TNXAQ16473 311 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 SAMD13Q5VXD3 122 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 RASL11AQ6T310 242 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 PRR7Q8TB68 274 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 RND1Q92730 232 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 NEUROG1Q92886 237 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 MGST2Q99735 147 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 ST20Q9HBF5 79 aa9.13□□□□□ -0.95
CUX1-204ENST00000393824 ASH1LQ9NR48 2969 aaKnown RBP9.12□□□□□ -0.95
CUX1-204ENST00000393824 GAGE12BA1L429 117 aa9.12□□□□□ -0.95
CUX1-204ENST00000393824 HSBP1O75506 76 aa9.12□□□□□ -0.95
CUX1-204ENST00000393824 OR2H2O95918 312 aa9.12□□□□□ -0.95
CUX1-204ENST00000393824 UBE2G1P62253 170 aa9.12□□□□□ -0.95
CUX1-204ENST00000393824 RELBQ01201 579 aa9.12□□□□□ -0.95
CUX1-204ENST00000393824 PAX2Q02962 417 aa9.12□□□□□ -0.95
CUX1-204ENST00000393824 Q56UQ5 140 aa9.12□□□□□ -0.95
CUX1-204ENST00000393824 BVES-AS1Q5T3Y7 98 aa9.12□□□□□ -0.95
CUX1-204ENST00000393824 MIC13Q5XKP0 118 aa9.12□□□□□ -0.95
CUX1-204ENST00000393824 BHLHA15Q7RTS1 189 aaPredicted RBP9.12□□□□□ -0.95
CUX1-204ENST00000393824 WIPF2Q8TF74 440 aaPredicted RBP9.12□□□□□ -0.95
CUX1-204ENST00000393824 TMEM186Q96B77 213 aa9.12□□□□□ -0.95
CUX1-204ENST00000393824 RTL8AQ9BWD3 113 aa9.12□□□□□ -0.95
CUX1-204ENST00000393824 C1RLQ9NZP8 487 aa9.12□□□□□ -0.95
CUX1-204ENST00000393824 JKAMPQ9P055 326 aa9.12□□□□□ -0.95
CUX1-204ENST00000393824 PKDREJQ9NTG1 2253 aa9.12□□□□□ -0.95
CUX1-204ENST00000393824 SERTM2A0A1B0GWG4 89 aa9.11□□□□□ -0.95
CUX1-204ENST00000393824 C17orf98A8MV24 154 aa9.11□□□□□ -0.95
CUX1-204ENST00000393824 CRXO43186 299 aaPredicted RBP9.11□□□□□ -0.95
CUX1-204ENST00000393824 KLF5Q13887 457 aaPredicted RBP9.11□□□□□ -0.95
CUX1-204ENST00000393824 CENPWQ5EE01 88 aa9.11□□□□□ -0.95
CUX1-204ENST00000393824 C5orf30Q96GV9 206 aa9.11□□□□□ -0.95
CUX1-204ENST00000393824 ZNF48Q96MX3 618 aaPredicted RBP9.11□□□□□ -0.95
CUX1-204ENST00000393824 DOPEY1Q5JWR5 2465 aa9.11□□□□□ -0.95
CUX1-204ENST00000393824 IZUMO1RA6ND01 250 aa9.11□□□□□ -0.95
CUX1-204ENST00000393824 OR2T8A6NH00 312 aa9.11□□□□□ -0.95
CUX1-204ENST00000393824 PRSS46E5RG02 174 aa9.11□□□□□ -0.95
CUX1-204ENST00000393824 RBMXL2O75526 392 aaKnown RBP9.11□□□□□ -0.95
CUX1-204ENST00000393824 SCGB1A1P11684 91 aa9.11□□□□□ -0.95
CUX1-204ENST00000393824 REG1BP48304 166 aa9.11□□□□□ -0.95
CUX1-204ENST00000393824 EFNB3Q15768 340 aa9.11□□□□□ -0.95
CUX1-204ENST00000393824 AMMECR1LQ6DCA0 310 aa9.11□□□□□ -0.95
CUX1-204ENST00000393824 C12orf54Q6X4T0 127 aa9.11□□□□□ -0.95
CUX1-204ENST00000393824 UBALD1Q8TB05 177 aa9.11□□□□□ -0.95
CUX1-204ENST00000393824 RNASE7Q9H1E1 156 aaKnown RBP9.11□□□□□ -0.95
CUX1-204ENST00000393824 LSM4Q9Y4Z0 139 aaKnown RBP9.11□□□□□ -0.95
CUX1-204ENST00000393824 SLC25A15Q9Y619 301 aa9.11□□□□□ -0.95
CUX1-204ENST00000393824 TENM4Q6N022 2769 aa9.11□□□□□ -0.95
CUX1-204ENST00000393824 VPS13CQ709C8 3753 aa9.11□□□□□ -0.95
CUX1-204ENST00000393824 CENPEQ02224 2701 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 FAM90A27PA6NNH2 459 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 FAM90A9PA6NNJ1 464 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 G3V4G9 280 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 M0R2Z0 102 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 CD5LO43866 347 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 RHBDL1O75783 438 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 GOSR1O95249 250 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 NUDT3O95989 172 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 IGKV3-15P01624 115 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 SLC35B1P78383 322 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 SLAQ13239 276 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 SPINK9Q5DT21 86 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 MRPL54Q6P161 138 aaKnown RBP9.1□□□□□ -0.95
CUX1-204ENST00000393824 PQLC2Q6ZP29 291 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 GALMQ96C23 342 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 MS4A5Q9H3V2 200 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 TECRQ9NZ01 308 aaKnown RBP9.1□□□□□ -0.95
CUX1-204ENST00000393824 WASHC3Q9Y3C0 194 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 TMEM30CPA0ZSE6 113 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 OR7C2O60412 319 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 SAP30O75446 220 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 CECR9P0C854 216 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 TIGITQ495A1 244 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 NINJ1Q92982 152 aa9.1□□□□□ -0.95
CUX1-204ENST00000393824 ZNF331Q9NQX6 463 aaPredicted RBP9.1□□□□□ -0.95
CUX1-204ENST00000393824 HEATR1Q9H583 2144 aaKnown RBP9.09□□□□□ -0.95
CUX1-204ENST00000393824 CSMD1Q96PZ7 3565 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 IGHV1-18A0A0C4DH31 117 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 M0R1X1 148 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 THBDP07204 575 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 USF1P22415 310 aaPredicted RBP9.09□□□□□ -0.95
CUX1-204ENST00000393824 CA6P23280 308 aa9.09□□□□□ -0.95
CUX1-204ENST00000393824 SLC35E4Q6ICL7 350 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms