RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 IGHV1-69-2A0A0G2JMI3 117 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 TMEM189A5PLL7 270 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 SMIM13P0DJ93 91 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 B3GALT5-AS1P59052 145 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 CX3CL1P78423 397 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 HOXA4Q00056 320 aaPredicted RBP11.84□□□□□ -0.51
RTF1-201ENST00000389629 ZNF414Q96IQ9 312 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 J3KRW8 73 aa11.83□□□□□ -0.52
RTF1-201ENST00000389629 MRPL32Q9BYC8 188 aaKnown RBP11.83□□□□□ -0.52
RTF1-201ENST00000389629 IFI27L2Q9H2X8 130 aa11.83□□□□□ -0.52
RTF1-201ENST00000389629 TRAV30A0A087WSZ9 112 aa11.83□□□□□ -0.52
RTF1-201ENST00000389629 A0A1W2PRE2 83 aa11.83□□□□□ -0.52
RTF1-201ENST00000389629 GAGE12BA1L429 117 aa11.83□□□□□ -0.52
RTF1-201ENST00000389629 RPP21Q9H633 154 aaKnown RBP11.83□□□□□ -0.52
RTF1-201ENST00000389629 NGBQ9NPG2 151 aa11.83□□□□□ -0.52
RTF1-201ENST00000389629 TRAV3A0A0B4J244 114 aa11.83□□□□□ -0.52
RTF1-201ENST00000389629 SMAGPQ0VAQ4 97 aa11.83□□□□□ -0.52
RTF1-201ENST00000389629 HIST1H4GQ99525 98 aa11.83□□□□□ -0.52
RTF1-201ENST00000389629 WDR87Q6ZQQ6 2873 aa11.83□□□□□ -0.52
RTF1-201ENST00000389629 FOXF2Q12947 444 aa11.83□□□□□ -0.52
RTF1-201ENST00000389629 GPR179Q6PRD1 2367 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 OR2T8A6NH00 312 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 C15orf62A8K5M9 175 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 ZNF138P52744 262 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 TMEM144Q7Z5S9 345 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 OR2K2Q8NGT1 345 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 MYOZ3Q8TDC0 251 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 ST20Q9HBF5 79 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 JKAMPQ9P055 326 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 KIR2DL5BA0A0G2JN68 375 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 KIR2DL5BA0A0G2JPC4 375 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 A0A1B0GV72 72 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 COA6Q5JTJ3 125 aaKnown RBP11.82□□□□□ -0.52
RTF1-201ENST00000389629 FAM53AQ6NSI3 398 aaPredicted RBP11.82□□□□□ -0.52
RTF1-201ENST00000389629 Q6P435 159 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 KIR2DL5AQ8N109 375 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 GCSAMQ8N6F7 178 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 LINC00479Q96M42 142 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 TRAV8-6A0A0B4J262 113 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 KIR2DL2P43627 348 aaPredicted RBP11.82□□□□□ -0.52
RTF1-201ENST00000389629 DTX1Q86Y01 620 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 WDR31Q8NA23 367 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 TRBV6-6A0A0A6YYG2 114 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 LINC00473A8K010 186 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 DUTP33316 252 aaKnown RBP11.82□□□□□ -0.52
RTF1-201ENST00000389629 CST9LQ9H4G1 147 aa11.82□□□□□ -0.52
RTF1-201ENST00000389629 MBNL2Q5VZF2 373 aaKnown RBP11.81□□□□□ -0.52
RTF1-201ENST00000389629 J3QW42 95 aa11.81□□□□□ -0.52
RTF1-201ENST00000389629 PSMB2P49721 201 aa11.81□□□□□ -0.52
RTF1-201ENST00000389629 Q0VG73 95 aa11.81□□□□□ -0.52
RTF1-201ENST00000389629 OCIAD2Q56VL3 154 aa11.81□□□□□ -0.52
RTF1-201ENST00000389629 ASPHD1Q5U4P2 390 aa11.81□□□□□ -0.52
RTF1-201ENST00000389629 SH2D7A6NKC9 451 aaPredicted RBP11.81□□□□□ -0.52
RTF1-201ENST00000389629 C9JCJ5 164 aa11.81□□□□□ -0.52
RTF1-201ENST00000389629 RPL27AP46776 148 aaKnown RBP11.81□□□□□ -0.52
RTF1-201ENST00000389629 HIST1H1AQ02539 215 aaPredicted RBP11.81□□□□□ -0.52
RTF1-201ENST00000389629 TEX43Q6ZNM6 134 aa11.81□□□□□ -0.52
RTF1-201ENST00000389629 SLC25A33Q9BSK2 321 aa11.81□□□□□ -0.52
RTF1-201ENST00000389629 IGKV3D-15A0A087WSY6 115 aa11.8□□□□□ -0.52
RTF1-201ENST00000389629 MYOD1P15172 320 aa11.8□□□□□ -0.52
RTF1-201ENST00000389629 CEACAM8P31997 349 aaPredicted RBP11.8□□□□□ -0.52
RTF1-201ENST00000389629 GPR82Q96P67 336 aa11.8□□□□□ -0.52
RTF1-201ENST00000389629 MRPS18CQ9Y3D5 142 aaKnown RBP11.8□□□□□ -0.52
RTF1-201ENST00000389629 INSIG2Q9Y5U4 225 aa11.8□□□□□ -0.52
RTF1-201ENST00000389629 THADAQ6YHU6 1953 aa11.8□□□□□ -0.52
RTF1-201ENST00000389629 CADP27708 2225 aa11.8□□□□□ -0.52
RTF1-201ENST00000389629 A0A1B0GUT8 65 aa11.8□□□□□ -0.52
RTF1-201ENST00000389629 IQCF6A8MYZ5 107 aa11.8□□□□□ -0.52
RTF1-201ENST00000389629 RNASE8Q8TDE3 154 aaKnown RBP11.8□□□□□ -0.52
RTF1-201ENST00000389629 SLC25A10Q9UBX3 287 aaPredicted RBP11.8□□□□□ -0.52
RTF1-201ENST00000389629 IGHV1-2P23083 117 aa11.8□□□□□ -0.52
RTF1-201ENST00000389629 YPEL3P61236 119 aaPredicted RBP11.8□□□□□ -0.52
RTF1-201ENST00000389629 RBPMS2Q6ZRY4 209 aaKnown RBP11.8□□□□□ -0.52
RTF1-201ENST00000389629 MRPS16Q9Y3D3 137 aaKnown RBP11.8□□□□□ -0.52
RTF1-201ENST00000389629 CECR9P0C854 216 aa11.8□□□□□ -0.52
RTF1-201ENST00000389629 PROK2Q9HC23 129 aa11.8□□□□□ -0.52
RTF1-201ENST00000389629 CCL25O15444 150 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 WDR82Q6UXN9 313 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 IDI2-AS1Q9NZ38 188 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 ONECUT1Q9UBC0 465 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 USF3Q68DE3 2245 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 Q0VFX4 171 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 MORN2Q502X0 79 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 OR52E5Q8NH55 327 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 ZNF502Q8TBZ5 544 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 RCHY1Q96PM5 261 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 PYGO2Q9BRQ0 406 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 RAB1CQ92928 201 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 SCNM1Q9BWG6 230 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 KLK15Q9H2R5 256 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 C15orf61A6NNL5 157 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 PRRG2O14669 202 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 COLCA1Q6ZS62 124 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 NUP35Q8NFH5 326 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 PRELID3AQ96N28 172 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 TMEM160Q9NX00 188 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 METRNQ9UJH8 293 aa11.79□□□□□ -0.52
RTF1-201ENST00000389629 ITGB1BP1O14713 200 aa11.78□□□□□ -0.52
RTF1-201ENST00000389629 PLA2G5P39877 138 aa11.78□□□□□ -0.52
RTF1-201ENST00000389629 Q6ZT83 130 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms