RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 STARD9Q9P2P6 4700 aa16.09■□□□□ 0.17
CCDC28B-201ENST00000373602 TNFSF8P32971 234 aa16.09■□□□□ 0.17
CCDC28B-201ENST00000373602 APOC4P55056 127 aa16.09■□□□□ 0.17
CCDC28B-201ENST00000373602 FAM90A2PQ658T7 463 aa16.09■□□□□ 0.17
CCDC28B-201ENST00000373602 GPR146Q96CH1 333 aa16.09■□□□□ 0.17
CCDC28B-201ENST00000373602 FNDC4Q9H6D8 234 aaPredicted RBP16.09■□□□□ 0.17
CCDC28B-201ENST00000373602 ZFAND3Q9H8U3 227 aa16.09■□□□□ 0.17
CCDC28B-201ENST00000373602 TMEM56-RWDD3S4R434 201 aa16.09■□□□□ 0.17
CCDC28B-201ENST00000373602 CSMD3Q7Z407 3707 aa16.09■□□□□ 0.17
CCDC28B-201ENST00000373602 IGHV3OR16-13A0A075B7E8 117 aa16.08■□□□□ 0.16
CCDC28B-201ENST00000373602 IGHV3-74A0A0B4J1X5 117 aa16.08■□□□□ 0.16
CCDC28B-201ENST00000373602 TMEM268Q5VZI3 342 aa16.08■□□□□ 0.16
CCDC28B-201ENST00000373602 Q6ZWC4 215 aa16.08■□□□□ 0.16
CCDC28B-201ENST00000373602 MRPL36Q9P0J6 103 aaKnown RBP16.08■□□□□ 0.16
CCDC28B-201ENST00000373602 CACNG5Q9UF02 275 aa16.08■□□□□ 0.16
CCDC28B-201ENST00000373602 SCP2D1Q9UJQ7 156 aa16.08■□□□□ 0.16
CCDC28B-201ENST00000373602 PUS1Q9Y606 427 aaKnown RBP eCLIP16.08■□□□□ 0.16
CCDC28B-201ENST00000373602 KIR2DL5BA0A0G2JN68 375 aa16.07■□□□□ 0.16
CCDC28B-201ENST00000373602 KIR2DL5BA0A0G2JPC4 375 aa16.07■□□□□ 0.16
CCDC28B-201ENST00000373602 FABP12A6NFH5 140 aa16.07■□□□□ 0.16
CCDC28B-201ENST00000373602 UBE2CO00762 179 aa16.07■□□□□ 0.16
CCDC28B-201ENST00000373602 CLN5O75503 358 aa16.07■□□□□ 0.16
CCDC28B-201ENST00000373602 CD5P06127 495 aa16.07■□□□□ 0.16
CCDC28B-201ENST00000373602 OPRK1P41145 380 aa16.07■□□□□ 0.16
CCDC28B-201ENST00000373602 KIR2DL5AQ8N109 375 aa16.07■□□□□ 0.16
CCDC28B-201ENST00000373602 OR4X1Q8NH49 305 aa16.07■□□□□ 0.16
CCDC28B-201ENST00000373602 KIR2DL5BQ8NHK3 375 aa16.07■□□□□ 0.16
CCDC28B-201ENST00000373602 MCFD2Q8NI22 146 aa16.07■□□□□ 0.16
CCDC28B-201ENST00000373602 ST8SIA2Q92186 375 aa16.07■□□□□ 0.16
CCDC28B-201ENST00000373602 TMEM230Q96A57 120 aa16.07■□□□□ 0.16
CCDC28B-201ENST00000373602 GALNT14Q96FL9 552 aa16.07■□□□□ 0.16
CCDC28B-201ENST00000373602 SCGB3A2Q96PL1 93 aa16.07■□□□□ 0.16
CCDC28B-201ENST00000373602 VSIRQ9H7M9 311 aa16.07■□□□□ 0.16
CCDC28B-201ENST00000373602 TP53TG1Q9Y2A0 90 aa16.07■□□□□ 0.16
CCDC28B-201ENST00000373602 A0A1B0GU03 582 aa16.06■□□□□ 0.16
CCDC28B-201ENST00000373602 BMI1P35226 326 aa16.06■□□□□ 0.16
CCDC28B-201ENST00000373602 HTR2BP41595 481 aa16.06■□□□□ 0.16
CCDC28B-201ENST00000373602 CMC4P56277 68 aaPredicted RBP16.06■□□□□ 0.16
CCDC28B-201ENST00000373602 MLANAQ16655 118 aa16.06■□□□□ 0.16
CCDC28B-201ENST00000373602 TCF24Q7RTU0 167 aa16.06■□□□□ 0.16
CCDC28B-201ENST00000373602 WFDC3Q8IUB2 231 aa16.06■□□□□ 0.16
CCDC28B-201ENST00000373602 IL22RA2Q969J5 263 aa16.06■□□□□ 0.16
CCDC28B-201ENST00000373602 IGKV3-7A0A075B6H7 116 aa16.05■□□□□ 0.16
CCDC28B-201ENST00000373602 SPRY2O43597 315 aa16.05■□□□□ 0.16
CCDC28B-201ENST00000373602 APOHP02749 345 aaPredicted RBP16.05■□□□□ 0.16
CCDC28B-201ENST00000373602 TFPI2P48307 235 aa16.05■□□□□ 0.16
CCDC28B-201ENST00000373602 TMEM187Q14656 261 aa16.05■□□□□ 0.16
CCDC28B-201ENST00000373602 C2orf83Q53S99 150 aa16.05■□□□□ 0.16
CCDC28B-201ENST00000373602 APRG1Q8IVJ8 170 aa16.05■□□□□ 0.16
CCDC28B-201ENST00000373602 LILRB2Q8N423 598 aa16.05■□□□□ 0.16
CCDC28B-201ENST00000373602 HEYLQ9NQ87 328 aaPredicted RBP16.05■□□□□ 0.16
CCDC28B-201ENST00000373602 MCUBQ9NWR8 336 aa16.05■□□□□ 0.16
CCDC28B-201ENST00000373602 KCNIP3Q9Y2W7 256 aa16.05■□□□□ 0.16
CCDC28B-201ENST00000373602 RPL35AP18077 110 aaKnown RBP16.04■□□□□ 0.16
CCDC28B-201ENST00000373602 PAFAH1B2P68402 229 aa16.04■□□□□ 0.16
CCDC28B-201ENST00000373602 DEFB135Q30KP9 77 aa16.04■□□□□ 0.16
CCDC28B-201ENST00000373602 STPG3Q8N7X2 389 aa16.04■□□□□ 0.16
CCDC28B-201ENST00000373602 RYR2Q92736 4967 aa16.03■□□□□ 0.16
CCDC28B-201ENST00000373602 RPS10-NUDT3A0A1W2PQS6 291 aa16.03■□□□□ 0.16
CCDC28B-201ENST00000373602 SCGB2A1O75556 95 aa16.03■□□□□ 0.16
CCDC28B-201ENST00000373602 GBGT1Q8N5D6 347 aa16.03■□□□□ 0.16
CCDC28B-201ENST00000373602 MAP6D1Q9H9H5 199 aa16.03■□□□□ 0.16
CCDC28B-201ENST00000373602 PRR13Q9NZ81 148 aa16.03■□□□□ 0.16
CCDC28B-201ENST00000373602 CACFD1Q9UGQ2 172 aa16.03■□□□□ 0.16
CCDC28B-201ENST00000373602 TRAV30A0A087WSZ9 112 aa16.02■□□□□ 0.16
CCDC28B-201ENST00000373602 CEBPZOSA8MTT3 80 aa16.02■□□□□ 0.16
CCDC28B-201ENST00000373602 DFFBO76075 338 aa16.02■□□□□ 0.16
CCDC28B-201ENST00000373602 IGKV1-17P01599 117 aa16.02■□□□□ 0.16
CCDC28B-201ENST00000373602 SULT1A3P0DMM9 295 aa16.02■□□□□ 0.16
CCDC28B-201ENST00000373602 SULT1A4P0DMN0 295 aa16.02■□□□□ 0.16
CCDC28B-201ENST00000373602 NPPCP23582 126 aa16.02■□□□□ 0.16
CCDC28B-201ENST00000373602 SUPT4H1P63272 117 aaKnown RBP16.02■□□□□ 0.16
CCDC28B-201ENST00000373602 ZNF124Q15973 351 aa16.02■□□□□ 0.16
CCDC28B-201ENST00000373602 SLC24A4Q8NFF2 622 aa16.02■□□□□ 0.16
CCDC28B-201ENST00000373602 RNASEH2CQ8TDP1 164 aaKnown RBP16.02■□□□□ 0.16
CCDC28B-201ENST00000373602 RNF183Q96D59 192 aa16.02■□□□□ 0.16
CCDC28B-201ENST00000373602 TMEM231Q9H6L2 316 aa16.02■□□□□ 0.16
CCDC28B-201ENST00000373602 IGHV3-66A0A0C4DH42 116 aa16.01■□□□□ 0.15
CCDC28B-201ENST00000373602 AKR1C4P17516 323 aa16.01■□□□□ 0.15
CCDC28B-201ENST00000373602 KLF9Q13886 244 aaPredicted RBP16.01■□□□□ 0.15
CCDC28B-201ENST00000373602 TIGITQ495A1 244 aa16.01■□□□□ 0.15
CCDC28B-201ENST00000373602 NMSQ5H8A3 153 aa16.01■□□□□ 0.15
CCDC28B-201ENST00000373602 PRSS54Q6PEW0 395 aa16.01■□□□□ 0.15
CCDC28B-201ENST00000373602 TMEM170AQ8WVE7 144 aa16.01■□□□□ 0.15
CCDC28B-201ENST00000373602 MS4A6AQ9H2W1 248 aa16.01■□□□□ 0.15
CCDC28B-201ENST00000373602 DNAH1Q9P2D7 4330 aa16■□□□□ 0.15
CCDC28B-201ENST00000373602 TRAV2A0A0B4J234 112 aa16■□□□□ 0.15
CCDC28B-201ENST00000373602 A0A0B4J2A0 478 aa16■□□□□ 0.15
CCDC28B-201ENST00000373602 A0A1W2PS18 150 aa16■□□□□ 0.15
CCDC28B-201ENST00000373602 SLC25A4P12235 298 aa16■□□□□ 0.15
CCDC28B-201ENST00000373602 CRYBB3P26998 211 aa16■□□□□ 0.15
CCDC28B-201ENST00000373602 TNFRSF9Q07011 255 aa16■□□□□ 0.15
CCDC28B-201ENST00000373602 TRIM63Q969Q1 353 aa16■□□□□ 0.15
CCDC28B-201ENST00000373602 METTL26Q96S19 204 aa16■□□□□ 0.15
CCDC28B-201ENST00000373602 SHPKQ9UHJ6 478 aa16■□□□□ 0.15
CCDC28B-201ENST00000373602 A0A0J9YWU9 116 aa15.99■□□□□ 0.15
CCDC28B-201ENST00000373602 DNASE2O00115 360 aaPredicted RBP15.99■□□□□ 0.15
CCDC28B-201ENST00000373602 NXPH3O95157 252 aa15.99■□□□□ 0.15
CCDC28B-201ENST00000373602 FAUP35544 74 aaKnown RBP15.99■□□□□ 0.15
CCDC28B-201ENST00000373602 CCR6P51684 374 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms