RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 PVRIGQ6DKI7 326 aa15.32■□□□□ 0.04
SHANK1-202ENST00000359082 THBDP07204 575 aa15.32■□□□□ 0.04
SHANK1-202ENST00000359082 DEFB104AQ8WTQ1 72 aa15.32■□□□□ 0.04
SHANK1-202ENST00000359082 TMEM133Q9H2Q1 129 aa15.32■□□□□ 0.04
SHANK1-202ENST00000359082 TRAV8-4A0A0B4J246 113 aa15.32■□□□□ 0.04
SHANK1-202ENST00000359082 RNF222A6NCQ9 220 aa15.32■□□□□ 0.04
SHANK1-202ENST00000359082 ADARB2-AS1A8MUL3 147 aa15.32■□□□□ 0.04
SHANK1-202ENST00000359082 HOXA3O43365 443 aaPredicted RBP15.32■□□□□ 0.04
SHANK1-202ENST00000359082 ZNF497Q6ZNH5 498 aa15.32■□□□□ 0.04
SHANK1-202ENST00000359082 DICER1Q9UPY3 1922 aaKnown RBP15.31■□□□□ 0.04
SHANK1-202ENST00000359082 C1QL4Q86Z23 238 aa15.31■□□□□ 0.04
SHANK1-202ENST00000359082 SEPSECSQ9HD40 501 aaKnown RBP15.31■□□□□ 0.04
SHANK1-202ENST00000359082 DPM2O94777 84 aa15.31■□□□□ 0.04
SHANK1-202ENST00000359082 OR9G9P0C7N8 305 aa15.31■□□□□ 0.04
SHANK1-202ENST00000359082 LTBRP36941 435 aa15.31■□□□□ 0.04
SHANK1-202ENST00000359082 TDGF1P3P51864 188 aa15.31■□□□□ 0.04
SHANK1-202ENST00000359082 TRBV6-7A0A0A0MS04 114 aa15.31■□□□□ 0.04
SHANK1-202ENST00000359082 LINC00527Q9UJ94 153 aa15.31■□□□□ 0.04
SHANK1-202ENST00000359082 YPEL1O60688 119 aa15.31■□□□□ 0.04
SHANK1-202ENST00000359082 NRN1LQ496H8 165 aa15.31■□□□□ 0.04
SHANK1-202ENST00000359082 ATRAIDQ6UW56 229 aa15.31■□□□□ 0.04
SHANK1-202ENST00000359082 RNASE6Q93091 150 aaKnown RBP15.31■□□□□ 0.04
SHANK1-202ENST00000359082 YPEL2Q96QA6 119 aa15.31■□□□□ 0.04
SHANK1-202ENST00000359082 IGHV3-73A0A0B4J1V6 119 aa15.3■□□□□ 0.04
SHANK1-202ENST00000359082 IGFBP3P17936 291 aaPredicted RBP15.3■□□□□ 0.04
SHANK1-202ENST00000359082 TMEM144Q7Z5S9 345 aa15.3■□□□□ 0.04
SHANK1-202ENST00000359082 OR9G4Q8NGQ1 327 aa15.3■□□□□ 0.04
SHANK1-202ENST00000359082 DUSP14O95147 198 aaKnown RBP15.3■□□□□ 0.04
SHANK1-202ENST00000359082 PSG8Q9UQ74 426 aa15.3■□□□□ 0.04
SHANK1-202ENST00000359082 C5orf30Q96GV9 206 aa15.3■□□□□ 0.04
SHANK1-202ENST00000359082 SIGLEC15Q6ZMC9 328 aa15.29■□□□□ 0.04
SHANK1-202ENST00000359082 IGKCP01834 107 aa15.29■□□□□ 0.04
SHANK1-202ENST00000359082 HBDP02042 147 aa15.29■□□□□ 0.04
SHANK1-202ENST00000359082 LAMTOR2Q9Y2Q5 125 aa15.29■□□□□ 0.04
SHANK1-202ENST00000359082 CEACAM1P13688 526 aa15.29■□□□□ 0.04
SHANK1-202ENST00000359082 PRR31Q5SQ13 230 aa15.29■□□□□ 0.04
SHANK1-202ENST00000359082 A0A1B0GTI1 187 aa15.29■□□□□ 0.04
SHANK1-202ENST00000359082 CCL20P78556 96 aa15.29■□□□□ 0.04
SHANK1-202ENST00000359082 UBE2DNLQ8IWF7 75 aa15.29■□□□□ 0.04
SHANK1-202ENST00000359082 WBP1Q96G27 269 aa15.29■□□□□ 0.04
SHANK1-202ENST00000359082 CYSLTR1Q9Y271 337 aa15.29■□□□□ 0.04
SHANK1-202ENST00000359082 TRGV11A0A075B6L2 103 aa15.28■□□□□ 0.04
SHANK1-202ENST00000359082 IGHV1-18A0A0C4DH31 117 aa15.28■□□□□ 0.04
SHANK1-202ENST00000359082 PSMG4Q5JS54 123 aa15.28■□□□□ 0.04
SHANK1-202ENST00000359082 TMEM170AQ8WVE7 144 aa15.28■□□□□ 0.04
SHANK1-202ENST00000359082 ANKRD36A6QL64 1941 aa15.28■□□□□ 0.04
SHANK1-202ENST00000359082 CHCHD5Q9BSY4 110 aa15.28■□□□□ 0.04
SHANK1-202ENST00000359082 MEGF9Q9H1U4 602 aa15.28■□□□□ 0.04
SHANK1-202ENST00000359082 PRDM13Q9H4Q3 707 aa15.28■□□□□ 0.04
SHANK1-202ENST00000359082 TRAV40A0A0B4J280 105 aa15.28■□□□□ 0.04
SHANK1-202ENST00000359082 ZNF883P0CG24 379 aa15.28■□□□□ 0.04
SHANK1-202ENST00000359082 LINC00114Q6XXX2 140 aa15.28■□□□□ 0.04
SHANK1-202ENST00000359082 SPRR3Q9UBC9 169 aa15.28■□□□□ 0.04
SHANK1-202ENST00000359082 PARP14Q460N5 1801 aa15.28■□□□□ 0.04
SHANK1-202ENST00000359082 LINC00158P58513 81 aa15.28■□□□□ 0.04
SHANK1-202ENST00000359082 TRAV5A0A0B4J249 113 aa15.28■□□□□ 0.04
SHANK1-202ENST00000359082 TIMM23O14925 209 aa15.28■□□□□ 0.04
SHANK1-202ENST00000359082 NDUFAF3Q9BU61 184 aa15.28■□□□□ 0.04
SHANK1-202ENST00000359082 A0A087WV48 116 aa15.27■□□□□ 0.04
SHANK1-202ENST00000359082 SLC25A2Q9BXI2 301 aa15.27■□□□□ 0.04
SHANK1-202ENST00000359082 IGKV2-40A0A087WW87 121 aaPredicted RBP15.27■□□□□ 0.04
SHANK1-202ENST00000359082 IGKV2D-40P01614 121 aaPredicted RBP15.27■□□□□ 0.04
SHANK1-202ENST00000359082 OR10W1Q8NGF6 305 aa15.27■□□□□ 0.04
SHANK1-202ENST00000359082 PIKFYVEQ9Y2I7 2098 aa15.27■□□□□ 0.04
SHANK1-202ENST00000359082 RNF126Q9BV68 326 aa15.27■□□□□ 0.04
SHANK1-202ENST00000359082 S100A7L2Q5SY68 101 aa15.27■□□□□ 0.03
SHANK1-202ENST00000359082 RIPPLY3P57055 190 aa15.27■□□□□ 0.03
SHANK1-202ENST00000359082 GZMBP10144 247 aa15.26■□□□□ 0.03
SHANK1-202ENST00000359082 PAX8Q06710 450 aa15.26■□□□□ 0.03
SHANK1-202ENST00000359082 METRNQ9UJH8 293 aa15.26■□□□□ 0.03
SHANK1-202ENST00000359082 MTCL1Q9Y4B5 1905 aaKnown RBP15.26■□□□□ 0.03
SHANK1-202ENST00000359082 CASP8AP2Q9UKL3 1982 aa15.26■□□□□ 0.03
SHANK1-202ENST00000359082 FOXL1Q12952 345 aa15.26■□□□□ 0.03
SHANK1-202ENST00000359082 LY6DQ14210 128 aa15.26■□□□□ 0.03
SHANK1-202ENST00000359082 VSIRQ9H7M9 311 aa15.26■□□□□ 0.03
SHANK1-202ENST00000359082 MRPS18CQ9Y3D5 142 aaKnown RBP15.26■□□□□ 0.03
SHANK1-202ENST00000359082 IMMP1LQ96LU5 166 aa15.26■□□□□ 0.03
SHANK1-202ENST00000359082 C8orf46Q8TAG6 207 aa15.26■□□□□ 0.03
SHANK1-202ENST00000359082 WFDC1Q9HC57 220 aa15.26■□□□□ 0.03
SHANK1-202ENST00000359082 PINLYPA6NC86 204 aa15.25■□□□□ 0.03
SHANK1-202ENST00000359082 CCDC88CQ9P219 2028 aa15.25■□□□□ 0.03
SHANK1-202ENST00000359082 CD300EQ496F6 205 aaPredicted RBP15.25■□□□□ 0.03
SHANK1-202ENST00000359082 CKS1BP61024 79 aa15.25■□□□□ 0.03
SHANK1-202ENST00000359082 VMO1Q7Z5L0 202 aa15.25■□□□□ 0.03
SHANK1-202ENST00000359082 SAP30O75446 220 aa15.25■□□□□ 0.03
SHANK1-202ENST00000359082 FXYD7P58549 80 aa15.25■□□□□ 0.03
SHANK1-202ENST00000359082 ERVK11-1P61568 191 aa15.25■□□□□ 0.03
SHANK1-202ENST00000359082 MLNRO43193 412 aa15.24■□□□□ 0.03
SHANK1-202ENST00000359082 GHRHP01286 108 aa15.24■□□□□ 0.03
SHANK1-202ENST00000359082 EFNB3Q15768 340 aa15.24■□□□□ 0.03
SHANK1-202ENST00000359082 WNT2P09544 360 aa15.24■□□□□ 0.03
SHANK1-202ENST00000359082 SBF2Q86WG5 1849 aa15.24■□□□□ 0.03
SHANK1-202ENST00000359082 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.24■□□□□ 0.03
SHANK1-202ENST00000359082 ORMDL2Q53FV1 153 aa15.24■□□□□ 0.03
SHANK1-202ENST00000359082 DTX2Q86UW9 622 aa15.24■□□□□ 0.03
SHANK1-202ENST00000359082 OCC1Q8TAD7 63 aa15.24■□□□□ 0.03
SHANK1-202ENST00000359082 CST9LQ9H4G1 147 aa15.24■□□□□ 0.03
SHANK1-202ENST00000359082 A0A0A6YYD4 124 aa15.24■□□□□ 0.03
SHANK1-202ENST00000359082 LINC00271P0C7V0 271 aa15.24■□□□□ 0.03
SHANK1-202ENST00000359082 CSRP3P50461 194 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms