RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 ELLP55199 621 aaPredicted RBP12.87□□□□□ -0.35
CLN3-203ENST00000357806 GGNBP1Q5YKI7 109 aa12.87□□□□□ -0.35
CLN3-203ENST00000357806 ADAMTSL5Q6ZMM2 481 aa12.87□□□□□ -0.35
CLN3-203ENST00000357806 NUDT15Q9NV35 164 aa12.87□□□□□ -0.35
CLN3-203ENST00000357806 TBC1D24Q9ULP9 559 aa12.87□□□□□ -0.35
CLN3-203ENST00000357806 TRAV6A0A075B6T7 132 aa12.86□□□□□ -0.35
CLN3-203ENST00000357806 FAM240BA0A1B0GVZ2 78 aa12.86□□□□□ -0.35
CLN3-203ENST00000357806 RPS10-NUDT3A0A1W2PQS6 291 aa12.86□□□□□ -0.35
CLN3-203ENST00000357806 EDN2P20800 178 aa12.86□□□□□ -0.35
CLN3-203ENST00000357806 CBLN1P23435 193 aa12.86□□□□□ -0.35
CLN3-203ENST00000357806 ASAH1Q13510 395 aa12.86□□□□□ -0.35
CLN3-203ENST00000357806 RNASEH2CQ8TDP1 164 aaKnown RBP12.86□□□□□ -0.35
CLN3-203ENST00000357806 CACNG8Q8WXS5 425 aa12.86□□□□□ -0.35
CLN3-203ENST00000357806 MARC2Q969Z3 335 aa12.86□□□□□ -0.35
CLN3-203ENST00000357806 TECRQ9NZ01 308 aaKnown RBP12.86□□□□□ -0.35
CLN3-203ENST00000357806 U3KQ87 197 aa12.86□□□□□ -0.35
CLN3-203ENST00000357806 SCGB2A1O75556 95 aa12.85□□□□□ -0.35
CLN3-203ENST00000357806 MED6O75586 246 aa12.85□□□□□ -0.35
CLN3-203ENST00000357806 IFNA10P01566 189 aa12.85□□□□□ -0.35
CLN3-203ENST00000357806 IFNA21P01568 189 aa12.85□□□□□ -0.35
CLN3-203ENST00000357806 TM4SF20Q53R12 229 aa12.85□□□□□ -0.35
CLN3-203ENST00000357806 FNDC4Q9H6D8 234 aaPredicted RBP12.85□□□□□ -0.35
CLN3-203ENST00000357806 DAZ1Q9NQZ3 744 aaKnown RBP12.85□□□□□ -0.35
CLN3-203ENST00000357806 LSM4Q9Y4Z0 139 aaKnown RBP12.85□□□□□ -0.35
CLN3-203ENST00000357806 ADAP1O75689 374 aa12.85□□□□□ -0.35
CLN3-203ENST00000357806 CD300EQ496F6 205 aaPredicted RBP12.85□□□□□ -0.35
CLN3-203ENST00000357806 C11orf87Q6NUJ2 197 aa12.85□□□□□ -0.35
CLN3-203ENST00000357806 OR52B4Q8NGK2 314 aa12.85□□□□□ -0.35
CLN3-203ENST00000357806 MITD1Q8WV92 249 aa12.85□□□□□ -0.35
CLN3-203ENST00000357806 C20orf24Q9BUV8 137 aa12.85□□□□□ -0.35
CLN3-203ENST00000357806 MRPL27Q9P0M9 148 aaKnown RBP12.85□□□□□ -0.35
CLN3-203ENST00000357806 H2AFB2P0C5Z0 115 aa12.84□□□□□ -0.35
CLN3-203ENST00000357806 DEFB114Q30KQ6 69 aa12.84□□□□□ -0.35
CLN3-203ENST00000357806 ETFRF1Q6IPR1 90 aa12.84□□□□□ -0.35
CLN3-203ENST00000357806 UXS1Q8NBZ7 420 aa12.84□□□□□ -0.35
CLN3-203ENST00000357806 OR4X1Q8NH49 305 aa12.84□□□□□ -0.35
CLN3-203ENST00000357806 ENKURQ8TC29 256 aa12.84□□□□□ -0.35
CLN3-203ENST00000357806 TMEM170AQ8WVE7 144 aa12.84□□□□□ -0.35
CLN3-203ENST00000357806 SMAD5-AS1Q9Y6J3 95 aa12.84□□□□□ -0.35
CLN3-203ENST00000357806 IZUMO1RA6ND01 250 aa12.83□□□□□ -0.36
CLN3-203ENST00000357806 C15orf62A8K5M9 175 aa12.83□□□□□ -0.36
CLN3-203ENST00000357806 CLN5O75503 358 aa12.83□□□□□ -0.36
CLN3-203ENST00000357806 C8orf88P0DMB2 117 aa12.83□□□□□ -0.36
CLN3-203ENST00000357806 SLC25A4P12235 298 aa12.83□□□□□ -0.36
CLN3-203ENST00000357806 ATP5IP56385 69 aaPredicted RBP12.83□□□□□ -0.36
CLN3-203ENST00000357806 GTSCR1Q86UQ5 136 aa12.83□□□□□ -0.36
CLN3-203ENST00000357806 CIB3Q96Q77 187 aaPredicted RBP12.83□□□□□ -0.36
CLN3-203ENST00000357806 MLXQ9UH92 298 aa12.83□□□□□ -0.36
CLN3-203ENST00000357806 MPTX1A8MV57 137 aa12.82□□□□□ -0.36
CLN3-203ENST00000357806 K7EMT4 169 aa12.82□□□□□ -0.36
CLN3-203ENST00000357806 SYNGR2O43760 224 aa12.82□□□□□ -0.36
CLN3-203ENST00000357806 YIF1AO95070 293 aa12.82□□□□□ -0.36
CLN3-203ENST00000357806 TMEM50AO95807 157 aa12.82□□□□□ -0.36
CLN3-203ENST00000357806 IAPPP10997 89 aa12.82□□□□□ -0.36
CLN3-203ENST00000357806 MLANAQ16655 118 aa12.82□□□□□ -0.36
CLN3-203ENST00000357806 BTNL8Q6UX41 500 aa12.82□□□□□ -0.36
CLN3-203ENST00000357806 ZNF600Q6ZNG1 722 aa12.82□□□□□ -0.36
CLN3-203ENST00000357806 B9D2Q9BPU9 175 aa12.82□□□□□ -0.36
CLN3-203ENST00000357806 MRPL36Q9P0J6 103 aaKnown RBP12.82□□□□□ -0.36
CLN3-203ENST00000357806 TGP01266 2768 aa12.82□□□□□ -0.36
CLN3-203ENST00000357806 IGHV3OR16-8A0A075B7F1 116 aa12.81□□□□□ -0.36
CLN3-203ENST00000357806 TRAV30A0A087WSZ9 112 aa12.81□□□□□ -0.36
CLN3-203ENST00000357806 IFNA4P05014 189 aa12.81□□□□□ -0.36
CLN3-203ENST00000357806 IFITM3Q01628 133 aa12.81□□□□□ -0.36
CLN3-203ENST00000357806 CD69Q07108 199 aa12.81□□□□□ -0.36
CLN3-203ENST00000357806 ZNF431Q8TF32 576 aaPredicted RBP12.81□□□□□ -0.36
CLN3-203ENST00000357806 ZNF414Q96IQ9 312 aa12.81□□□□□ -0.36
CLN3-203ENST00000357806 OR10C1Q96KK4 312 aa12.81□□□□□ -0.36
CLN3-203ENST00000357806 GINS3Q9BRX5 216 aa12.81□□□□□ -0.36
CLN3-203ENST00000357806 MAGT1Q9H0U3 335 aa12.81□□□□□ -0.36
CLN3-203ENST00000357806 ZNF207O43670 478 aaKnown RBP12.8□□□□□ -0.36
CLN3-203ENST00000357806 RND2P52198 227 aa12.8□□□□□ -0.36
CLN3-203ENST00000357806 RAB11AP62491 216 aa12.8□□□□□ -0.36
CLN3-203ENST00000357806 RPP30P78346 268 aaKnown RBP12.8□□□□□ -0.36
CLN3-203ENST00000357806 PRSS54Q6PEW0 395 aa12.8□□□□□ -0.36
CLN3-203ENST00000357806 SLC16A13Q7RTY0 426 aa12.8□□□□□ -0.36
CLN3-203ENST00000357806 TMEM61Q8N0U2 210 aa12.8□□□□□ -0.36
CLN3-203ENST00000357806 TMEM116Q8NCL8 245 aa12.8□□□□□ -0.36
CLN3-203ENST00000357806 OR4D5Q8NGN0 318 aa12.8□□□□□ -0.36
CLN3-203ENST00000357806 SEC22CQ9BRL7 303 aa12.8□□□□□ -0.36
CLN3-203ENST00000357806 WRBO00258 174 aa12.79□□□□□ -0.36
CLN3-203ENST00000357806 NKX2-1P43699 371 aaPredicted RBP12.79□□□□□ -0.36
CLN3-203ENST00000357806 DEFA1P59665 94 aa12.79□□□□□ -0.36
CLN3-203ENST00000357806 DEFA3P59666 94 aa12.79□□□□□ -0.36
CLN3-203ENST00000357806 GUCA2BQ16661 112 aa12.79□□□□□ -0.36
CLN3-203ENST00000357806 IAH1Q2TAA2 248 aaPredicted RBP12.79□□□□□ -0.36
CLN3-203ENST00000357806 OR1S2Q8NGQ3 325 aa12.79□□□□□ -0.36
CLN3-203ENST00000357806 WDR89Q96FK6 387 aaPredicted RBP12.79□□□□□ -0.36
CLN3-203ENST00000357806 PUS1Q9Y606 427 aaKnown RBP eCLIP12.79□□□□□ -0.36
CLN3-203ENST00000357806 SELENOKQ9Y6D0 94 aa12.79□□□□□ -0.36
CLN3-203ENST00000357806 TRAV25A0A0B4J276 109 aa12.78□□□□□ -0.36
CLN3-203ENST00000357806 ID3Q02535 119 aa12.78□□□□□ -0.36
CLN3-203ENST00000357806 TOMM20LQ6UXN7 152 aa12.78□□□□□ -0.36
CLN3-203ENST00000357806 RBPMS2Q6ZRY4 209 aaKnown RBP12.78□□□□□ -0.36
CLN3-203ENST00000357806 Q8N1Y9 231 aa12.78□□□□□ -0.36
CLN3-203ENST00000357806 ZFAND3Q9H8U3 227 aa12.78□□□□□ -0.36
CLN3-203ENST00000357806 PAIP2BQ9ULR5 123 aaKnown RBP12.78□□□□□ -0.36
CLN3-203ENST00000357806 TRAV14DV4A0A0A6YYC5 116 aa12.78□□□□□ -0.36
CLN3-203ENST00000357806 IGHV7-4-1A0A0J9YVY3 117 aa12.78□□□□□ -0.36
CLN3-203ENST00000357806 ZNF785A8K8V0 405 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms