RNA–Protein interactions for RNA: ENST00000342494.7

UBE3B-202, Transcript of ubiquitin protein ligase E3B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE3B, Length 5,722 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-202ENST00000342494 TRGV11A0A075B6L2 103 aa12.45□□□□□ -0.42
UBE3B-202ENST00000342494 SRRM5B3KS81 715 aa12.45□□□□□ -0.42
UBE3B-202ENST00000342494 K7ERU9 68 aa12.45□□□□□ -0.42
UBE3B-202ENST00000342494 ZNF415Q09FC8 603 aa12.45□□□□□ -0.42
UBE3B-202ENST00000342494 SSC4DQ8WTU2 575 aa12.45□□□□□ -0.42
UBE3B-202ENST00000342494 FOXC2Q99958 501 aa12.45□□□□□ -0.42
UBE3B-202ENST00000342494 SOD3P08294 240 aa12.45□□□□□ -0.42
UBE3B-202ENST00000342494 KLRD1Q13241 179 aa12.45□□□□□ -0.42
UBE3B-202ENST00000342494 NEUROG3Q9Y4Z2 214 aa12.45□□□□□ -0.42
UBE3B-202ENST00000342494 ORMDL3Q8N138 153 aa12.45□□□□□ -0.42
UBE3B-202ENST00000342494 TMEM178BH3BS89 294 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 DUTP33316 252 aaKnown RBP12.44□□□□□ -0.42
UBE3B-202ENST00000342494 PRCDQ00LT1 54 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 C3orf56Q8N813 242 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 RPUSD1Q9UJJ7 312 aaKnown RBP12.44□□□□□ -0.42
UBE3B-202ENST00000342494 SLC25A15Q9Y619 301 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 GNG5P63218 68 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 C17orf82Q86X59 251 aaPredicted RBP12.44□□□□□ -0.42
UBE3B-202ENST00000342494 ST20Q9HBF5 79 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 SPTBN1Q01082 2364 aaKnown RBP12.44□□□□□ -0.42
UBE3B-202ENST00000342494 ZNF646O15015 1829 aaPredicted RBP12.44□□□□□ -0.42
UBE3B-202ENST00000342494 IGKV3D-20A0A0C4DH25 116 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 ERVK11-1P61568 191 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 Q0VFX4 171 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 SRSF6Q13247 344 aaKnown RBP12.44□□□□□ -0.42
UBE3B-202ENST00000342494 WFDC12Q8WWY7 111 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 ZNF257Q9Y2Q1 563 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 TRBV7-9A0A0J9YWB2 115 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 IGHV1-8P0DP01 117 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 PLP1P60201 277 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 MINOS1Q5TGZ0 78 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 SIGLEC15Q6ZMC9 328 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 PMCHL2Q9BQD1 86 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 MINOS1-NBL1R4GNA1 71 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 TMEM8BA6NDV4 472 aa12.44□□□□□ -0.42
UBE3B-202ENST00000342494 TCF21O43680 179 aa12.43□□□□□ -0.42
UBE3B-202ENST00000342494 SELLP14151 372 aa12.43□□□□□ -0.42
UBE3B-202ENST00000342494 SLC25A16P16260 332 aa12.43□□□□□ -0.42
UBE3B-202ENST00000342494 NAT1P18440 290 aa12.43□□□□□ -0.42
UBE3B-202ENST00000342494 IFI27P40305 119 aaPredicted RBP12.43□□□□□ -0.42
UBE3B-202ENST00000342494 OR9G4Q8NGQ1 327 aa12.43□□□□□ -0.42
UBE3B-202ENST00000342494 TMEM200BQ69YZ2 307 aa12.43□□□□□ -0.42
UBE3B-202ENST00000342494 ZNF319Q9P2F9 582 aa12.43□□□□□ -0.42
UBE3B-202ENST00000342494 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.43□□□□□ -0.42
UBE3B-202ENST00000342494 CRYGSP22914 178 aa12.43□□□□□ -0.42
UBE3B-202ENST00000342494 Q6ZS92 163 aa12.43□□□□□ -0.42
UBE3B-202ENST00000342494 CHCHD5Q9BSY4 110 aa12.43□□□□□ -0.42
UBE3B-202ENST00000342494 VCX2Q9H322 139 aa12.43□□□□□ -0.42
UBE3B-202ENST00000342494 COL6A6A6NMZ7 2263 aa12.43□□□□□ -0.42
UBE3B-202ENST00000342494 MLNRO43193 412 aa12.43□□□□□ -0.42
UBE3B-202ENST00000342494 C15orf32Q32M92 178 aa12.43□□□□□ -0.42
UBE3B-202ENST00000342494 MDS2Q8NDY4 140 aa12.43□□□□□ -0.42
UBE3B-202ENST00000342494 TUBGCP6Q96RT7 1819 aa12.43□□□□□ -0.42
UBE3B-202ENST00000342494 RBMY1BA6NDE4 496 aaKnown RBP12.42□□□□□ -0.42
UBE3B-202ENST00000342494 RBMY1EA6NEQ0 496 aaKnown RBP12.42□□□□□ -0.42
UBE3B-202ENST00000342494 EFNA2O43921 213 aa12.42□□□□□ -0.42
UBE3B-202ENST00000342494 RBMY1DP0C7P1 496 aaKnown RBP12.42□□□□□ -0.42
UBE3B-202ENST00000342494 RBMY1A1P0DJD3 496 aaKnown RBP12.42□□□□□ -0.42
UBE3B-202ENST00000342494 RBMY1CP0DJD4 496 aa12.42□□□□□ -0.42
UBE3B-202ENST00000342494 HEPN1Q6WQI6 88 aa12.42□□□□□ -0.42
UBE3B-202ENST00000342494 MPTX1A8MV57 137 aa12.42□□□□□ -0.42
UBE3B-202ENST00000342494 OOSP1A8MZH6 123 aa12.42□□□□□ -0.42
UBE3B-202ENST00000342494 OVOL1O14753 267 aa12.42□□□□□ -0.42
UBE3B-202ENST00000342494 NUDT10Q8NFP7 164 aa12.42□□□□□ -0.42
UBE3B-202ENST00000342494 LILRA1O75019 489 aa12.42□□□□□ -0.42
UBE3B-202ENST00000342494 TPTE2P1Q5T6R2 138 aa12.42□□□□□ -0.42
UBE3B-202ENST00000342494 JKAMPQ9P055 326 aa12.42□□□□□ -0.42
UBE3B-202ENST00000342494 SP5Q6BEB4 398 aaPredicted RBP12.42□□□□□ -0.42
UBE3B-202ENST00000342494 TCF23Q7RTU1 214 aa12.42□□□□□ -0.42
UBE3B-202ENST00000342494 SELENOKQ9Y6D0 94 aa12.42□□□□□ -0.42
UBE3B-202ENST00000342494 PAQR4Q8N4S7 273 aaPredicted RBP12.41□□□□□ -0.42
UBE3B-202ENST00000342494 TTC9CQ8N5M4 171 aa12.41□□□□□ -0.42
UBE3B-202ENST00000342494 HIGD1CA8MV81 97 aa12.41□□□□□ -0.42
UBE3B-202ENST00000342494 PYYP10082 97 aa12.41□□□□□ -0.42
UBE3B-202ENST00000342494 NHLRC3Q5JS37 347 aa12.41□□□□□ -0.42
UBE3B-202ENST00000342494 MBD3L4A6NDZ8 208 aaPredicted RBP12.41□□□□□ -0.42
UBE3B-202ENST00000342494 MBD3L3A6NE82 208 aaPredicted RBP12.41□□□□□ -0.42
UBE3B-202ENST00000342494 MBD3L5A6NJ08 208 aaPredicted RBP12.41□□□□□ -0.42
UBE3B-202ENST00000342494 LINC01356Q8N9X3 169 aa12.41□□□□□ -0.42
UBE3B-202ENST00000342494 MBD3L2Q8NHZ7 208 aaPredicted RBP12.41□□□□□ -0.42
UBE3B-202ENST00000342494 IGHV1-3A0A0C4DH29 117 aa12.41□□□□□ -0.42
UBE3B-202ENST00000342494 C18orf12Q96KH6 178 aa12.41□□□□□ -0.42
UBE3B-202ENST00000342494 FBLN5Q9UBX5 448 aa12.41□□□□□ -0.42
UBE3B-202ENST00000342494 SRSF7Q16629 238 aaKnown RBP eCLIP12.4□□□□□ -0.42
UBE3B-202ENST00000342494 ZNF324BQ6AW86 544 aaPredicted RBP12.4□□□□□ -0.42
UBE3B-202ENST00000342494 PGPEP1Q9NXJ5 209 aa12.4□□□□□ -0.42
UBE3B-202ENST00000342494 CRIM1Q9NZV1 1036 aa12.4□□□□□ -0.42
UBE3B-202ENST00000342494 EPDR1Q9UM22 224 aa12.4□□□□□ -0.42
UBE3B-202ENST00000342494 PSG8Q9UQ74 426 aa12.4□□□□□ -0.42
UBE3B-202ENST00000342494 LYPD3O95274 346 aa12.4□□□□□ -0.42
UBE3B-202ENST00000342494 NUDT11Q96G61 164 aa12.4□□□□□ -0.42
UBE3B-202ENST00000342494 OR10W1Q8NGF6 305 aa12.4□□□□□ -0.42
UBE3B-202ENST00000342494 MRPL16Q9NX20 251 aaKnown RBP12.4□□□□□ -0.42
UBE3B-202ENST00000342494 DPRXA6NFQ7 191 aa12.4□□□□□ -0.42
UBE3B-202ENST00000342494 IMMP2LQ96T52 175 aa12.4□□□□□ -0.42
UBE3B-202ENST00000342494 PTPRFP10586 1907 aa12.4□□□□□ -0.42
UBE3B-202ENST00000342494 RNF114Q9Y508 228 aa12.4□□□□□ -0.43
UBE3B-202ENST00000342494 A0A087WX48 190 aa12.39□□□□□ -0.43
UBE3B-202ENST00000342494 IZUMO1RA6ND01 250 aa12.39□□□□□ -0.43
UBE3B-202ENST00000342494 ZNF815PA8K554 130 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms