RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 PRSS46E5RG02 174 aa17.11■□□□□ 0.33
SDC3-202ENST00000339394 CLEC3BP05452 202 aa17.11■□□□□ 0.33
SDC3-202ENST00000339394 CD69Q07108 199 aa17.11■□□□□ 0.33
SDC3-202ENST00000339394 FGL1Q08830 312 aa17.11■□□□□ 0.33
SDC3-202ENST00000339394 OR8G2PQ6IF36 304 aa17.11■□□□□ 0.33
SDC3-202ENST00000339394 CLEC19AQ6UXS0 136 aa17.11■□□□□ 0.33
SDC3-202ENST00000339394 UBAC2Q8NBM4 344 aa17.11■□□□□ 0.33
SDC3-202ENST00000339394 OR11H1Q8NG94 326 aa17.11■□□□□ 0.33
SDC3-202ENST00000339394 MRPL36Q9P0J6 103 aaKnown RBP17.11■□□□□ 0.33
SDC3-202ENST00000339394 PEF1Q9UBV8 284 aaKnown RBP17.11■□□□□ 0.33
SDC3-202ENST00000339394 F8W735 103 aaPredicted RBP17.1■□□□□ 0.33
SDC3-202ENST00000339394 CCNKO75909 580 aa17.1■□□□□ 0.33
SDC3-202ENST00000339394 P2RY1P47900 373 aa17.1■□□□□ 0.33
SDC3-202ENST00000339394 ETFRF1Q6IPR1 90 aa17.1■□□□□ 0.33
SDC3-202ENST00000339394 TMEM252Q8N6L7 170 aa17.1■□□□□ 0.33
SDC3-202ENST00000339394 THAP6Q8TBB0 222 aa17.1■□□□□ 0.33
SDC3-202ENST00000339394 RAX2Q96IS3 184 aa17.1■□□□□ 0.33
SDC3-202ENST00000339394 DUX3Q96PT4 197 aa17.1■□□□□ 0.33
SDC3-202ENST00000339394 RANGRFQ9HD47 186 aaPredicted RBP17.1■□□□□ 0.33
SDC3-202ENST00000339394 LYL1P12980 280 aa17.09■□□□□ 0.33
SDC3-202ENST00000339394 GPR183P32249 361 aa17.09■□□□□ 0.33
SDC3-202ENST00000339394 GPX4P36969 197 aaPredicted RBP17.09■□□□□ 0.33
SDC3-202ENST00000339394 MFAP4P55083 255 aa17.09■□□□□ 0.33
SDC3-202ENST00000339394 FAM209BQ5JX69 171 aa17.09■□□□□ 0.33
SDC3-202ENST00000339394 ACSM6Q6P461 480 aa17.09■□□□□ 0.33
SDC3-202ENST00000339394 OR1N2Q8NGR9 330 aa17.09■□□□□ 0.33
SDC3-202ENST00000339394 CACNG8Q8WXS5 425 aa17.09■□□□□ 0.33
SDC3-202ENST00000339394 IGHV4OR15-8A0A075B7B6 117 aa17.08■□□□□ 0.32
SDC3-202ENST00000339394 A0A087WW49 117 aa17.08■□□□□ 0.32
SDC3-202ENST00000339394 IGSF23A1L1A6 192 aa17.08■□□□□ 0.32
SDC3-202ENST00000339394 OR2T8A6NH00 312 aa17.08■□□□□ 0.32
SDC3-202ENST00000339394 CCL24O00175 119 aa17.08■□□□□ 0.32
SDC3-202ENST00000339394 CST7O76096 145 aa17.08■□□□□ 0.32
SDC3-202ENST00000339394 HSPB1P04792 205 aaKnown RBP17.08■□□□□ 0.32
SDC3-202ENST00000339394 SLC25A4P12235 298 aa17.08■□□□□ 0.32
SDC3-202ENST00000339394 FCGR2BP31994 310 aaPredicted RBP17.08■□□□□ 0.32
SDC3-202ENST00000339394 ARL16Q0P5N6 197 aa17.08■□□□□ 0.32
SDC3-202ENST00000339394 Q56UQ5 140 aa17.08■□□□□ 0.32
SDC3-202ENST00000339394 SLC16A13Q7RTY0 426 aa17.08■□□□□ 0.32
SDC3-202ENST00000339394 OR10P1Q8NGE3 313 aa17.08■□□□□ 0.32
SDC3-202ENST00000339394 OR4X1Q8NH49 305 aa17.08■□□□□ 0.32
SDC3-202ENST00000339394 TXN2Q99757 166 aa17.08■□□□□ 0.32
SDC3-202ENST00000339394 PPP5D1E7EU14 171 aa17.07■□□□□ 0.32
SDC3-202ENST00000339394 NPBWR1P48145 328 aa17.07■□□□□ 0.32
SDC3-202ENST00000339394 HAPLN4Q86UW8 402 aa17.07■□□□□ 0.32
SDC3-202ENST00000339394 TMEM116Q8NCL8 245 aa17.07■□□□□ 0.32
SDC3-202ENST00000339394 OR4F17Q8NGA8 305 aa17.07■□□□□ 0.32
SDC3-202ENST00000339394 OR4F4Q96R69 305 aa17.07■□□□□ 0.32
SDC3-202ENST00000339394 ATP6V0BQ99437 205 aa17.07■□□□□ 0.32
SDC3-202ENST00000339394 ZC4H2Q9NQZ6 224 aa17.07■□□□□ 0.32
SDC3-202ENST00000339394 G3V3Q6 166 aa17.06■□□□□ 0.32
SDC3-202ENST00000339394 M0QZ24 198 aa17.06■□□□□ 0.32
SDC3-202ENST00000339394 BMPR1BO00238 502 aa17.06■□□□□ 0.32
SDC3-202ENST00000339394 SULT1A1P50225 295 aa17.06■□□□□ 0.32
SDC3-202ENST00000339394 ZNF616Q08AN1 781 aa17.06■□□□□ 0.32
SDC3-202ENST00000339394 GAMTQ14353 236 aa17.06■□□□□ 0.32
SDC3-202ENST00000339394 ACOT7LQ6ZUV0 252 aa17.06■□□□□ 0.32
SDC3-202ENST00000339394 TMEM217Q8N7C4 229 aa17.06■□□□□ 0.32
SDC3-202ENST00000339394 DCUN1D4Q92564 292 aa17.06■□□□□ 0.32
SDC3-202ENST00000339394 SMLR1H3BR10 107 aa17.06■□□□□ 0.32
SDC3-202ENST00000339394 ARL3P36405 182 aa17.06■□□□□ 0.32
SDC3-202ENST00000339394 FHL3Q13643 280 aa17.06■□□□□ 0.32
SDC3-202ENST00000339394 STX12Q86Y82 276 aa17.06■□□□□ 0.32
SDC3-202ENST00000339394 DPF1Q92782 380 aa17.06■□□□□ 0.32
SDC3-202ENST00000339394 BSCL2Q96G97 398 aaPredicted RBP17.06■□□□□ 0.32
SDC3-202ENST00000339394 ACY3Q96HD9 319 aa17.06■□□□□ 0.32
SDC3-202ENST00000339394 ST6GAL2Q96JF0 529 aa17.06■□□□□ 0.32
SDC3-202ENST00000339394 SLC25A31Q9H0C2 315 aa17.06■□□□□ 0.32
SDC3-202ENST00000339394 GAR1Q9NY12 217 aaKnown RBP17.06■□□□□ 0.32
SDC3-202ENST00000339394 VWFP04275 2813 aa17.05■□□□□ 0.32
SDC3-202ENST00000339394 LINC01619G3V211 115 aa17.05■□□□□ 0.32
SDC3-202ENST00000339394 TGOLN2O43493 480 aa17.05■□□□□ 0.32
SDC3-202ENST00000339394 GNG7O60262 68 aa17.05■□□□□ 0.32
SDC3-202ENST00000339394 CLN5O75503 358 aa17.05■□□□□ 0.32
SDC3-202ENST00000339394 CTSGP08311 255 aa17.05■□□□□ 0.32
SDC3-202ENST00000339394 MYCNOSP40205 109 aa17.05■□□□□ 0.32
SDC3-202ENST00000339394 RND2P52198 227 aa17.05■□□□□ 0.32
SDC3-202ENST00000339394 NPIPB3Q92617 1050 aa17.05■□□□□ 0.32
SDC3-202ENST00000339394 CHRDL1Q9BU40 450 aa17.05■□□□□ 0.32
SDC3-202ENST00000339394 ADMP35318 185 aa17.04■□□□□ 0.32
SDC3-202ENST00000339394 EWSR1Q01844 656 aaKnown RBP eCLIP17.04■□□□□ 0.321e-6■■■■□ 22.7
SDC3-202ENST00000339394 NHLH2Q02577 135 aa17.04■□□□□ 0.32
SDC3-202ENST00000339394 SLC35E1Q96K37 410 aa17.04■□□□□ 0.32
SDC3-202ENST00000339394 GGCTO75223 188 aaKnown RBP17.03■□□□□ 0.32
SDC3-202ENST00000339394 OR2C1O95371 312 aa17.03■□□□□ 0.32
SDC3-202ENST00000339394 TSPAN15O95858 294 aa17.03■□□□□ 0.32
SDC3-202ENST00000339394 RPL12P30050 165 aaKnown RBP17.03■□□□□ 0.32
SDC3-202ENST00000339394 HOXD3P31249 432 aaPredicted RBP17.03■□□□□ 0.32
SDC3-202ENST00000339394 SPSB3Q6PJ21 355 aa17.03■□□□□ 0.32
SDC3-202ENST00000339394 NUPL2O15504 423 aaKnown RBP17.02■□□□□ 0.32
SDC3-202ENST00000339394 SCAF4O95104 1147 aaKnown RBP17.02■□□□□ 0.32
SDC3-202ENST00000339394 PF4P02776 101 aa17.02■□□□□ 0.32
SDC3-202ENST00000339394 ZP3P21754 424 aa17.02■□□□□ 0.32
SDC3-202ENST00000339394 SLC38A11Q08AI6 406 aa17.02■□□□□ 0.32
SDC3-202ENST00000339394 GGACTQ9BVM4 153 aa17.02■□□□□ 0.32
SDC3-202ENST00000339394 S100A11P31949 105 aa17.02■□□□□ 0.31
SDC3-202ENST00000339394 SLURP1P55000 103 aa17.02■□□□□ 0.31
SDC3-202ENST00000339394 HBG1P69891 147 aa17.02■□□□□ 0.31
SDC3-202ENST00000339394 HBG2P69892 147 aa17.02■□□□□ 0.31
SDC3-202ENST00000339394 DLK1P80370 383 aa17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms