RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 HBE1P02100 147 aa12.25□□□□□ -0.45
LIMS1-202ENST00000338045 S100A8P05109 93 aa12.25□□□□□ -0.45
LIMS1-202ENST00000338045 APELAP0DMC3 54 aa12.25□□□□□ -0.45
LIMS1-202ENST00000338045 RPL29P47914 159 aaKnown RBP12.25□□□□□ -0.45
LIMS1-202ENST00000338045 SRSF3P84103 164 aaKnown RBP12.25□□□□□ -0.45
LIMS1-202ENST00000338045 NDPQ00604 133 aa12.25□□□□□ -0.45
LIMS1-202ENST00000338045 RAB31Q13636 194 aa12.25□□□□□ -0.45
LIMS1-202ENST00000338045 ARPC1AQ92747 370 aa12.25□□□□□ -0.45
LIMS1-202ENST00000338045 BIN3Q9NQY0 253 aa12.25□□□□□ -0.45
LIMS1-202ENST00000338045 IGHV7-81A0A0B4J1V7 117 aa12.25□□□□□ -0.45
LIMS1-202ENST00000338045 CD5P06127 495 aa12.25□□□□□ -0.45
LIMS1-202ENST00000338045 CCL20P78556 96 aa12.25□□□□□ -0.45
LIMS1-202ENST00000338045 ACOT6Q3I5F7 207 aaPredicted RBP12.25□□□□□ -0.45
LIMS1-202ENST00000338045 SSX7Q7RTT5 188 aa12.25□□□□□ -0.45
LIMS1-202ENST00000338045 BPIFCQ8NFQ6 507 aa12.25□□□□□ -0.45
LIMS1-202ENST00000338045 SFT2D1Q8WV19 159 aa12.25□□□□□ -0.45
LIMS1-202ENST00000338045 SLC35E1Q96K37 410 aa12.25□□□□□ -0.45
LIMS1-202ENST00000338045 LINC00052Q96N35 136 aa12.25□□□□□ -0.45
LIMS1-202ENST00000338045 PXMP4Q9Y6I8 212 aa12.25□□□□□ -0.45
LIMS1-202ENST00000338045 YIF1AO95070 293 aa12.24□□□□□ -0.45
LIMS1-202ENST00000338045 FBP1P09467 338 aa12.24□□□□□ -0.45
LIMS1-202ENST00000338045 PRR20EP86478 221 aa12.24□□□□□ -0.45
LIMS1-202ENST00000338045 PRR20CP86479 221 aa12.24□□□□□ -0.45
LIMS1-202ENST00000338045 PRR20DP86480 221 aa12.24□□□□□ -0.45
LIMS1-202ENST00000338045 PRR20BP86481 221 aa12.24□□□□□ -0.45
LIMS1-202ENST00000338045 PRR20AP86496 221 aa12.24□□□□□ -0.45
LIMS1-202ENST00000338045 MIC13Q5XKP0 118 aa12.24□□□□□ -0.45
LIMS1-202ENST00000338045 ETFRF1Q6IPR1 90 aa12.24□□□□□ -0.45
LIMS1-202ENST00000338045 C19orf35Q6ZS72 473 aa12.24□□□□□ -0.45
LIMS1-202ENST00000338045 OR10G4Q8NGN3 311 aa12.24□□□□□ -0.45
LIMS1-202ENST00000338045 OR10G9Q8NGN4 311 aa12.24□□□□□ -0.45
LIMS1-202ENST00000338045 OR10G7Q8NGN6 311 aa12.24□□□□□ -0.45
LIMS1-202ENST00000338045 OR2T6Q8NHC8 308 aa12.24□□□□□ -0.45
LIMS1-202ENST00000338045 ABHD5Q8WTS1 349 aa12.24□□□□□ -0.45
LIMS1-202ENST00000338045 SLC45A2Q9UMX9 530 aa12.24□□□□□ -0.45
LIMS1-202ENST00000338045 FAM96BQ9Y3D0 163 aa12.24□□□□□ -0.45
LIMS1-202ENST00000338045 CELSR1Q9NYQ6 3014 aa12.24□□□□□ -0.45
LIMS1-202ENST00000338045 SEC14L6B5MCN3 397 aa12.23□□□□□ -0.45
LIMS1-202ENST00000338045 TAS2R60P59551 318 aa12.23□□□□□ -0.45
LIMS1-202ENST00000338045 ASPHD1Q5U4P2 390 aa12.23□□□□□ -0.45
LIMS1-202ENST00000338045 FAM103A1Q9BTL3 118 aaKnown RBP12.23□□□□□ -0.45
LIMS1-202ENST00000338045 WNT10AQ9GZT5 417 aa12.23□□□□□ -0.45
LIMS1-202ENST00000338045 SOX21Q9Y651 276 aaPredicted RBP12.23□□□□□ -0.45
LIMS1-202ENST00000338045 CTXND1A0A1B0GTU2 59 aa12.23□□□□□ -0.45
LIMS1-202ENST00000338045 NPIPB5A8MRT5 1133 aa12.23□□□□□ -0.45
LIMS1-202ENST00000338045 EGR2P11161 476 aaPredicted RBP12.23□□□□□ -0.45
LIMS1-202ENST00000338045 BTN1A1Q13410 526 aa12.23□□□□□ -0.45
LIMS1-202ENST00000338045 STPG3Q8N7X2 389 aa12.23□□□□□ -0.45
LIMS1-202ENST00000338045 C5orf56Q8N8D9 126 aa12.23□□□□□ -0.45
LIMS1-202ENST00000338045 THAP8Q8NA92 274 aa12.23□□□□□ -0.45
LIMS1-202ENST00000338045 OR1L6Q8NGR2 347 aa12.23□□□□□ -0.45
LIMS1-202ENST00000338045 MISP3Q96FF7 219 aa12.23□□□□□ -0.45
LIMS1-202ENST00000338045 SSX3Q99909 188 aa12.23□□□□□ -0.45
LIMS1-202ENST00000338045 RASL11BQ9BPW5 248 aa12.23□□□□□ -0.45
LIMS1-202ENST00000338045 MRPL36Q9P0J6 103 aaKnown RBP12.23□□□□□ -0.45
LIMS1-202ENST00000338045 PRRC2AP48634 2157 aaKnown RBP12.23□□□□□ -0.45
LIMS1-202ENST00000338045 A0A1B0GV50 99 aa12.22□□□□□ -0.45
LIMS1-202ENST00000338045 TMEM218A2RU14 115 aa12.22□□□□□ -0.45
LIMS1-202ENST00000338045 CYB5BO43169 146 aa12.22□□□□□ -0.45
LIMS1-202ENST00000338045 CIDEAO60543 219 aa12.22□□□□□ -0.45
LIMS1-202ENST00000338045 FSHBP01225 129 aa12.22□□□□□ -0.45
LIMS1-202ENST00000338045 LINC00869P0C866 280 aa12.22□□□□□ -0.45
LIMS1-202ENST00000338045 GUK1Q16774 197 aa12.22□□□□□ -0.45
LIMS1-202ENST00000338045 LCN15Q6UWW0 184 aa12.22□□□□□ -0.45
LIMS1-202ENST00000338045 TTC9CQ8N5M4 171 aa12.22□□□□□ -0.45
LIMS1-202ENST00000338045 TMEM116Q8NCL8 245 aa12.22□□□□□ -0.45
LIMS1-202ENST00000338045 ACY3Q96HD9 319 aa12.22□□□□□ -0.45
LIMS1-202ENST00000338045 SLC25A33Q9BSK2 321 aa12.22□□□□□ -0.45
LIMS1-202ENST00000338045 ACTR3CQ9C0K3 210 aaPredicted RBP12.22□□□□□ -0.45
LIMS1-202ENST00000338045 SLC39A9Q9NUM3 307 aa12.22□□□□□ -0.45
LIMS1-202ENST00000338045 MAP1LC3B2A6NCE7 125 aa12.21□□□□□ -0.45
LIMS1-202ENST00000338045 OR10J1P30954 320 aa12.21□□□□□ -0.45
LIMS1-202ENST00000338045 GCSAMLQ5JQS6 135 aa12.21□□□□□ -0.45
LIMS1-202ENST00000338045 NPIPB3Q92617 1050 aa12.21□□□□□ -0.45
LIMS1-202ENST00000338045 HSPB9Q9BQS6 159 aa12.21□□□□□ -0.45
LIMS1-202ENST00000338045 PBDC1Q9BVG4 233 aa12.21□□□□□ -0.45
LIMS1-202ENST00000338045 MAP1LC3BQ9GZQ8 125 aa12.21□□□□□ -0.45
LIMS1-202ENST00000338045 TMEM231Q9H6L2 316 aa12.21□□□□□ -0.45
LIMS1-202ENST00000338045 SLC25A22Q9H936 323 aa12.21□□□□□ -0.45
LIMS1-202ENST00000338045 MOB4Q9Y3A3 225 aa12.21□□□□□ -0.45
LIMS1-202ENST00000338045 ABCA1O95477 2261 aa12.21□□□□□ -0.46
LIMS1-202ENST00000338045 IGKV1D-37A0A075B6S9 117 aa12.21□□□□□ -0.46
LIMS1-202ENST00000338045 I3L2K1 104 aa12.21□□□□□ -0.46
LIMS1-202ENST00000338045 MT-CO2P00403 227 aa12.21□□□□□ -0.46
LIMS1-202ENST00000338045 PMS2P11Q13670 270 aa12.21□□□□□ -0.46
LIMS1-202ENST00000338045 LBHQ53QV2 105 aaPredicted RBP12.21□□□□□ -0.46
LIMS1-202ENST00000338045 WFDC11Q8NEX6 87 aa12.21□□□□□ -0.46
LIMS1-202ENST00000338045 RAB24Q969Q5 203 aa12.21□□□□□ -0.46
LIMS1-202ENST00000338045 NEU1Q99519 415 aa12.21□□□□□ -0.46
LIMS1-202ENST00000338045 TREM1Q9NP99 234 aa12.21□□□□□ -0.46
LIMS1-202ENST00000338045 CREBBPQ92793 2442 aa12.2□□□□□ -0.46
LIMS1-202ENST00000338045 A6NDX4 124 aa12.2□□□□□ -0.46
LIMS1-202ENST00000338045 C9JQL5 133 aa12.2□□□□□ -0.46
LIMS1-202ENST00000338045 AMY1AP04745 511 aa12.2□□□□□ -0.46
LIMS1-202ENST00000338045 DEFA4P12838 97 aa12.2□□□□□ -0.46
LIMS1-202ENST00000338045 CDC34P49427 236 aaPredicted RBP12.2□□□□□ -0.46
LIMS1-202ENST00000338045 RND2P52198 227 aa12.2□□□□□ -0.46
LIMS1-202ENST00000338045 CYB5R2Q6BCY4 276 aa12.2□□□□□ -0.46
LIMS1-202ENST00000338045 SGMS2Q8NHU3 365 aa12.2□□□□□ -0.46
LIMS1-202ENST00000338045 NARS2Q96I59 477 aaKnown RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 925.7 ms