RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 ZBTB8BQ8NAP8 495 aaPredicted RBP12.13□□□□□ -0.47
CCDC28A-201ENST00000332797 OR4D5Q8NGN0 318 aa12.13□□□□□ -0.47
CCDC28A-201ENST00000332797 TXN2Q99757 166 aa12.13□□□□□ -0.47
CCDC28A-201ENST00000332797 MARVELD1Q9BSK0 173 aa12.13□□□□□ -0.47
CCDC28A-201ENST00000332797 FNDC4Q9H6D8 234 aaPredicted RBP12.13□□□□□ -0.47
CCDC28A-201ENST00000332797 GAR1Q9NY12 217 aaKnown RBP12.13□□□□□ -0.47
CCDC28A-201ENST00000332797 GSKIPQ9P0R6 139 aa12.13□□□□□ -0.47
CCDC28A-201ENST00000332797 RPS10-NUDT3A0A1W2PQS6 291 aa12.12□□□□□ -0.47
CCDC28A-201ENST00000332797 FCGR2BP31994 310 aaPredicted RBP12.12□□□□□ -0.47
CCDC28A-201ENST00000332797 ADMP35318 185 aa12.12□□□□□ -0.47
CCDC28A-201ENST00000332797 EGFEM1PQ0D2K5 195 aa12.12□□□□□ -0.47
CCDC28A-201ENST00000332797 MLANAQ16655 118 aa12.12□□□□□ -0.47
CCDC28A-201ENST00000332797 RGS21Q2M5E4 152 aa12.12□□□□□ -0.47
CCDC28A-201ENST00000332797 REC114Q7Z4M0 266 aa12.12□□□□□ -0.47
CCDC28A-201ENST00000332797 HAPLN4Q86UW8 402 aa12.12□□□□□ -0.47
CCDC28A-201ENST00000332797 RNASEH2CQ8TDP1 164 aaKnown RBP12.12□□□□□ -0.47
CCDC28A-201ENST00000332797 CIB3Q96Q77 187 aaPredicted RBP12.12□□□□□ -0.47
CCDC28A-201ENST00000332797 PAIP2BQ9ULR5 123 aaKnown RBP12.12□□□□□ -0.47
CCDC28A-201ENST00000332797 C5orf51A6NDU8 294 aa12.11□□□□□ -0.47
CCDC28A-201ENST00000332797 LGALS9O00182 355 aa12.11□□□□□ -0.47
CCDC28A-201ENST00000332797 NUPL2O15504 423 aaKnown RBP12.11□□□□□ -0.47
CCDC28A-201ENST00000332797 IFNA4P05014 189 aa12.11□□□□□ -0.47
CCDC28A-201ENST00000332797 CTSGP08311 255 aa12.11□□□□□ -0.47
CCDC28A-201ENST00000332797 NPBWR1P48145 328 aa12.11□□□□□ -0.47
CCDC28A-201ENST00000332797 POLR2GP62487 172 aaKnown RBP eCLIP12.11□□□□□ -0.47
CCDC28A-201ENST00000332797 ID3Q02535 119 aa12.11□□□□□ -0.47
CCDC28A-201ENST00000332797 IL34Q6ZMJ4 242 aa12.11□□□□□ -0.47
CCDC28A-201ENST00000332797 MRPL36Q9P0J6 103 aaKnown RBP12.11□□□□□ -0.47
CCDC28A-201ENST00000332797 SSSCA1O60232 199 aa12.1□□□□□ -0.47
CCDC28A-201ENST00000332797 PTTG1O95997 202 aa12.1□□□□□ -0.47
CCDC28A-201ENST00000332797 CSN3P07498 182 aa12.1□□□□□ -0.47
CCDC28A-201ENST00000332797 UNQ9165/PRO28630Q6UXU0 137 aa12.1□□□□□ -0.47
CCDC28A-201ENST00000332797 ZNF436Q9C0F3 470 aaPredicted RBP12.1□□□□□ -0.47
CCDC28A-201ENST00000332797 AURKAIP1Q9NWT8 199 aaPredicted RBP12.1□□□□□ -0.47
CCDC28A-201ENST00000332797 C15orf62A8K5M9 175 aa12.09□□□□□ -0.47
CCDC28A-201ENST00000332797 SNRPGP15A8MWD9 76 aa12.09□□□□□ -0.47
CCDC28A-201ENST00000332797 H3BP45 60 aa12.09□□□□□ -0.47
CCDC28A-201ENST00000332797 EDN2P20800 178 aa12.09□□□□□ -0.47
CCDC28A-201ENST00000332797 ATP5IP56385 69 aaPredicted RBP12.09□□□□□ -0.47
CCDC28A-201ENST00000332797 RAB11AP62491 216 aa12.09□□□□□ -0.47
CCDC28A-201ENST00000332797 RPP30P78346 268 aaKnown RBP12.09□□□□□ -0.47
CCDC28A-201ENST00000332797 RELQ04864 619 aaPredicted RBP12.09□□□□□ -0.47
CCDC28A-201ENST00000332797 ETFRF1Q6IPR1 90 aa12.09□□□□□ -0.47
CCDC28A-201ENST00000332797 ZMAT5Q9UDW3 170 aaKnown RBP12.09□□□□□ -0.47
CCDC28A-201ENST00000332797 C2orf70A6NJV1 201 aa12.08□□□□□ -0.47
CCDC28A-201ENST00000332797 A8MWP6 167 aa12.08□□□□□ -0.47
CCDC28A-201ENST00000332797 NDUFA4O00483 81 aa12.08□□□□□ -0.47
CCDC28A-201ENST00000332797 CLN5O75503 358 aa12.08□□□□□ -0.47
CCDC28A-201ENST00000332797 SLC25A4P12235 298 aa12.08□□□□□ -0.47
CCDC28A-201ENST00000332797 SPANXN5Q5MJ07 72 aa12.08□□□□□ -0.47
CCDC28A-201ENST00000332797 PRSS54Q6PEW0 395 aa12.08□□□□□ -0.47
CCDC28A-201ENST00000332797 GSG1LQ6UXU4 331 aa12.08□□□□□ -0.47
CCDC28A-201ENST00000332797 SLC16A13Q7RTY0 426 aa12.08□□□□□ -0.47
CCDC28A-201ENST00000332797 OR4X1Q8NH49 305 aa12.08□□□□□ -0.47
CCDC28A-201ENST00000332797 TMEM190Q8WZ59 177 aa12.08□□□□□ -0.47
CCDC28A-201ENST00000332797 UFC1Q9Y3C8 167 aa12.08□□□□□ -0.47
CCDC28A-201ENST00000332797 IGHV3OR16-8A0A075B7F1 116 aa12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 TMEM213A2RRL7 107 aa12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 GOSR2O14653 212 aa12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 LY86O95711 162 aa12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 TMEM50AO95807 157 aa12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 IGLV1-51P01701 117 aa12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 MBPP02686 304 aaPredicted RBP12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 FOLR2P14207 255 aa12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 RND2P52198 227 aa12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 CD69Q07108 199 aa12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 TM4SF20Q53R12 229 aa12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 ADAMTSL5Q6ZMM2 481 aa12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 DYNLRB2Q8TF09 96 aa12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 CACNG8Q8WXS5 425 aa12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 ACY3Q96HD9 319 aa12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 C2orf50Q96LR7 162 aa12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 C20orf24Q9BUV8 137 aa12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 SIGLEC8Q9NYZ4 499 aa12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 PSENENQ9NZ42 101 aa12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 RCL1Q9Y2P8 373 aaKnown RBP12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 STRAPQ9Y3F4 350 aaKnown RBP12.08□□□□□ -0.48
CCDC28A-201ENST00000332797 SSNA1O43805 119 aa12.07□□□□□ -0.48
CCDC28A-201ENST00000332797 SCGB2A1O75556 95 aa12.07□□□□□ -0.48
CCDC28A-201ENST00000332797 YIF1AO95070 293 aa12.07□□□□□ -0.48
CCDC28A-201ENST00000332797 PRR25Q96S07 402 aa12.07□□□□□ -0.48
CCDC28A-201ENST00000332797 ZNF256Q9Y2P7 627 aaPredicted RBP12.07□□□□□ -0.48
CCDC28A-201ENST00000332797 LSM5Q9Y4Y9 91 aaKnown RBP12.07□□□□□ -0.48
CCDC28A-201ENST00000332797 ZNF207O43670 478 aaKnown RBP12.06□□□□□ -0.48
CCDC28A-201ENST00000332797 SIX6O95475 246 aa12.06□□□□□ -0.48
CCDC28A-201ENST00000332797 CBLN1P23435 193 aa12.06□□□□□ -0.48
CCDC28A-201ENST00000332797 OXA1LQ15070 435 aa12.06□□□□□ -0.48
CCDC28A-201ENST00000332797 TMEM116Q8NCL8 245 aa12.06□□□□□ -0.48
CCDC28A-201ENST00000332797 NPIPB3Q92617 1050 aa12.06□□□□□ -0.48
CCDC28A-201ENST00000332797 ZNF414Q96IQ9 312 aa12.06□□□□□ -0.48
CCDC28A-201ENST00000332797 SMIM8Q96KF7 97 aa12.06□□□□□ -0.48
CCDC28A-201ENST00000332797 RAB40CQ96S21 281 aa12.06□□□□□ -0.48
CCDC28A-201ENST00000332797 SELENOKQ9Y6D0 94 aa12.06□□□□□ -0.48
CCDC28A-201ENST00000332797 WI2-2373I1.2A0A1W2PRP0 233 aa12.05□□□□□ -0.48
CCDC28A-201ENST00000332797 K7EPK0 472 aa12.05□□□□□ -0.48
CCDC28A-201ENST00000332797 OR10J1P30954 320 aa12.05□□□□□ -0.48
CCDC28A-201ENST00000332797 GPX4P36969 197 aaPredicted RBP12.05□□□□□ -0.48
CCDC28A-201ENST00000332797 ELLP55199 621 aaPredicted RBP12.05□□□□□ -0.48
CCDC28A-201ENST00000332797 S100A10P60903 97 aa12.05□□□□□ -0.48
CCDC28A-201ENST00000332797 TIGITQ495A1 244 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms