RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 RTN4RL2Q86UN3 420 aa12.1□□□□□ -0.47
COL7A1-201ENST00000328333 SP9P0CG40 484 aa12.1□□□□□ -0.47
COL7A1-201ENST00000328333 ARRDC1-AS1Q9H2J1 176 aa12.1□□□□□ -0.47
COL7A1-201ENST00000328333 WBP1LQ9NX94 342 aa12.1□□□□□ -0.47
COL7A1-201ENST00000328333 TMEM229AB2RXF0 380 aa12.09□□□□□ -0.47
COL7A1-201ENST00000328333 FGF16O43320 207 aa12.09□□□□□ -0.47
COL7A1-201ENST00000328333 BOD1L2Q8IYS8 172 aa12.09□□□□□ -0.47
COL7A1-201ENST00000328333 DUX5Q96PT3 197 aa12.09□□□□□ -0.47
COL7A1-201ENST00000328333 TEX45Q8NA69 505 aa12.09□□□□□ -0.47
COL7A1-201ENST00000328333 TTTY12Q9BZ98 90 aa12.09□□□□□ -0.47
COL7A1-201ENST00000328333 BDP1A6H8Y1 2624 aa12.09□□□□□ -0.47
COL7A1-201ENST00000328333 TRAV2A0A0B4J234 112 aa12.09□□□□□ -0.47
COL7A1-201ENST00000328333 SPINT1O43278 529 aa12.09□□□□□ -0.47
COL7A1-201ENST00000328333 ZNF205O95201 554 aa12.09□□□□□ -0.47
COL7A1-201ENST00000328333 NAPSAO96009 420 aa12.09□□□□□ -0.47
COL7A1-201ENST00000328333 ZP1P60852 638 aa12.09□□□□□ -0.47
COL7A1-201ENST00000328333 CGB1A6NKQ9 187 aa12.09□□□□□ -0.47
COL7A1-201ENST00000328333 GAGE1Q13065 139 aa12.09□□□□□ -0.47
COL7A1-201ENST00000328333 THY1P04216 161 aa12.09□□□□□ -0.47
COL7A1-201ENST00000328333 FOXD3Q9UJU5 478 aaPredicted RBP12.09□□□□□ -0.47
COL7A1-201ENST00000328333 SRSF7Q16629 238 aaKnown RBP eCLIP12.09□□□□□ -0.47
COL7A1-201ENST00000328333 TPTE2P1Q5T6R2 138 aa12.09□□□□□ -0.47
COL7A1-201ENST00000328333 ABHD17AQ96GS6 310 aa12.09□□□□□ -0.47
COL7A1-201ENST00000328333 TNFRSF6BO95407 300 aa12.08□□□□□ -0.47
COL7A1-201ENST00000328333 PF4V1P10720 104 aa12.08□□□□□ -0.47
COL7A1-201ENST00000328333 TMEM144Q7Z5S9 345 aa12.08□□□□□ -0.47
COL7A1-201ENST00000328333 PLEKHB2Q96CS7 222 aa12.08□□□□□ -0.47
COL7A1-201ENST00000328333 NTN1O95631 604 aa12.08□□□□□ -0.48
COL7A1-201ENST00000328333 IFI27L1Q96BM0 104 aa12.08□□□□□ -0.48
COL7A1-201ENST00000328333 SCARF2Q96GP6 870 aaPredicted RBP12.08□□□□□ -0.48
COL7A1-201ENST00000328333 FABP5P3A8MUU1 101 aa12.08□□□□□ -0.48
COL7A1-201ENST00000328333 SPINK8P0C7L1 97 aa12.08□□□□□ -0.48
COL7A1-201ENST00000328333 CCL13Q99616 98 aa12.08□□□□□ -0.48
COL7A1-201ENST00000328333 TGIF1Q15583 401 aa12.08□□□□□ -0.48
COL7A1-201ENST00000328333 ADMP35318 185 aa12.08□□□□□ -0.48
COL7A1-201ENST00000328333 WFDC3Q8IUB2 231 aa12.08□□□□□ -0.48
COL7A1-201ENST00000328333 FAM60AQ9NP50 221 aa12.08□□□□□ -0.48
COL7A1-201ENST00000328333 CEP192Q8TEP8 1941 aa12.08□□□□□ -0.48
COL7A1-201ENST00000328333 ST6GALNAC3Q8NDV1 305 aa12.08□□□□□ -0.48
COL7A1-201ENST00000328333 PLXNA4Q9HCM2 1894 aa12.07□□□□□ -0.48
COL7A1-201ENST00000328333 FAM90A2PQ658T7 463 aa12.07□□□□□ -0.48
COL7A1-201ENST00000328333 TEX38Q6PEX7 206 aa12.07□□□□□ -0.48
COL7A1-201ENST00000328333 HILPDAQ9Y5L2 63 aa12.07□□□□□ -0.48
COL7A1-201ENST00000328333 IGHV5-10-1A0A0J9YXX1 117 aa12.07□□□□□ -0.48
COL7A1-201ENST00000328333 ZNF106Q9H2Y7 1883 aaKnown RBP12.07□□□□□ -0.48
COL7A1-201ENST00000328333 NEGR1Q7Z3B1 354 aa12.07□□□□□ -0.48
COL7A1-201ENST00000328333 NPIPB3Q92617 1050 aa12.07□□□□□ -0.48
COL7A1-201ENST00000328333 ST6GALNAC6Q969X2 333 aa12.07□□□□□ -0.48
COL7A1-201ENST00000328333 EAF1Q96JC9 268 aaPredicted RBP12.07□□□□□ -0.48
COL7A1-201ENST00000328333 TRAV12-3A0A0B4J271 114 aa12.07□□□□□ -0.48
COL7A1-201ENST00000328333 AMBPP02760 352 aa12.07□□□□□ -0.48
COL7A1-201ENST00000328333 PILRBQ9UKJ0 227 aa12.07□□□□□ -0.48
COL7A1-201ENST00000328333 EPDR1Q9UM22 224 aa12.07□□□□□ -0.48
COL7A1-201ENST00000328333 TRIP6Q15654 476 aaKnown RBP12.07□□□□□ -0.48
COL7A1-201ENST00000328333 C9orf172C9J069 976 aa12.06□□□□□ -0.48
COL7A1-201ENST00000328333 RSPO3Q9BXY4 272 aaPredicted RBP12.06□□□□□ -0.48
COL7A1-201ENST00000328333 COX11Q9Y6N1 276 aa12.06□□□□□ -0.48
COL7A1-201ENST00000328333 RNF222A6NCQ9 220 aa12.06□□□□□ -0.48
COL7A1-201ENST00000328333 SIGLEC14Q08ET2 396 aa12.06□□□□□ -0.48
COL7A1-201ENST00000328333 RPRMLQ8N4K4 120 aa12.06□□□□□ -0.48
COL7A1-201ENST00000328333 SLC25A39Q9BZJ4 359 aaPredicted RBP12.06□□□□□ -0.48
COL7A1-201ENST00000328333 PLSCR4Q9NRQ2 329 aa12.06□□□□□ -0.48
COL7A1-201ENST00000328333 C21orf62Q9NYP8 219 aa12.06□□□□□ -0.48
COL7A1-201ENST00000328333 C15orf61A6NNL5 157 aa12.06□□□□□ -0.48
COL7A1-201ENST00000328333 HRKO00198 91 aa12.06□□□□□ -0.48
COL7A1-201ENST00000328333 LEPROTO15243 131 aa12.06□□□□□ -0.48
COL7A1-201ENST00000328333 C1orf162Q8NEQ5 155 aaPredicted RBP12.06□□□□□ -0.48
COL7A1-201ENST00000328333 CCL8P80075 99 aa12.06□□□□□ -0.48
COL7A1-201ENST00000328333 KLF14Q8TD94 323 aaPredicted RBP12.06□□□□□ -0.48
COL7A1-201ENST00000328333 C18orf12Q96KH6 178 aa12.06□□□□□ -0.48
COL7A1-201ENST00000328333 B9A039 149 aa12.06□□□□□ -0.48
COL7A1-201ENST00000328333 COL9A1P20849 921 aa12.06□□□□□ -0.48
COL7A1-201ENST00000328333 Q5BKY6 102 aa12.06□□□□□ -0.48
COL7A1-201ENST00000328333 PMS2CLQ68D20 193 aa12.06□□□□□ -0.48
COL7A1-201ENST00000328333 ZNF385AQ96PM9 386 aaKnown RBP12.06□□□□□ -0.48
COL7A1-201ENST00000328333 C2CD4DB7Z1M9 353 aa12.05□□□□□ -0.48
COL7A1-201ENST00000328333 F8W1H4 67 aa12.05□□□□□ -0.48
COL7A1-201ENST00000328333 MESP2Q0VG99 397 aa12.05□□□□□ -0.48
COL7A1-201ENST00000328333 MAJINQ3KP22 176 aa12.05□□□□□ -0.48
COL7A1-201ENST00000328333 RTBDNQ9BSG5 229 aaPredicted RBP12.05□□□□□ -0.48
COL7A1-201ENST00000328333 IGHV1OR15-9A0A0B4J2B8 117 aa12.05□□□□□ -0.48
COL7A1-201ENST00000328333 H3BMM0 161 aa12.05□□□□□ -0.48
COL7A1-201ENST00000328333 ZFP36L2P47974 494 aaKnown RBP12.05□□□□□ -0.48
COL7A1-201ENST00000328333 A0A1W2PPE3 182 aa12.05□□□□□ -0.48
COL7A1-201ENST00000328333 ZNF362Q5T0B9 420 aaPredicted RBP12.05□□□□□ -0.48
COL7A1-201ENST00000328333 LILRA6Q6PI73 481 aa12.05□□□□□ -0.48
COL7A1-201ENST00000328333 IGKV1D-16P01601 117 aa12.05□□□□□ -0.48
COL7A1-201ENST00000328333 CD69Q07108 199 aa12.05□□□□□ -0.48
COL7A1-201ENST00000328333 ACP7Q6ZNF0 438 aa12.05□□□□□ -0.48
COL7A1-201ENST00000328333 ABHD12Q8N2K0 398 aa12.05□□□□□ -0.48
COL7A1-201ENST00000328333 CFHR5Q9BXR6 569 aa12.05□□□□□ -0.48
COL7A1-201ENST00000328333 DUSP15Q9H1R2 295 aaPredicted RBP12.05□□□□□ -0.48
COL7A1-201ENST00000328333 TRGV11A0A075B6L2 103 aa12.04□□□□□ -0.48
COL7A1-201ENST00000328333 PPIAL4CA0A0B4J2A2 164 aa12.04□□□□□ -0.48
COL7A1-201ENST00000328333 PPIAL4GP0DN37 164 aa12.04□□□□□ -0.48
COL7A1-201ENST00000328333 C2orf82Q6UX34 121 aa12.04□□□□□ -0.48
COL7A1-201ENST00000328333 EDA2RQ9HAV5 297 aa12.04□□□□□ -0.48
COL7A1-201ENST00000328333 GZMBP10144 247 aa12.04□□□□□ -0.48
COL7A1-201ENST00000328333 ZNF525Q8N782 197 aa12.04□□□□□ -0.48
COL7A1-201ENST00000328333 TCRBV4S1A1TA0A5B7 111 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms