RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 CHRNB4P30926 498 aa13.02□□□□□ -0.33
USHBP1-202ENST00000324554 TDRG1Q3Y452 100 aa13.02□□□□□ -0.33
USHBP1-202ENST00000324554 NDUFA4L2Q9NRX3 87 aa13.02□□□□□ -0.33
USHBP1-202ENST00000324554 TMEM167BQ9NRX6 74 aa13.02□□□□□ -0.33
USHBP1-202ENST00000324554 JKAMPQ9P055 326 aa13.02□□□□□ -0.33
USHBP1-202ENST00000324554 PPIAL4EA0A075B759 164 aa13.01□□□□□ -0.33
USHBP1-202ENST00000324554 ZNF705FA8MVS1 300 aaPredicted RBP13.01□□□□□ -0.33
USHBP1-202ENST00000324554 PPIAL4DF5H284 164 aa13.01□□□□□ -0.33
USHBP1-202ENST00000324554 TMEM178BH3BS89 294 aa13.01□□□□□ -0.33
USHBP1-202ENST00000324554 SPINK4O60575 86 aa13.01□□□□□ -0.33
USHBP1-202ENST00000324554 ZNF705DP0CH99 300 aaPredicted RBP13.01□□□□□ -0.33
USHBP1-202ENST00000324554 ZNF705BP0CI00 300 aaPredicted RBP13.01□□□□□ -0.33
USHBP1-202ENST00000324554 PPIAL4FP0DN26 164 aa13.01□□□□□ -0.33
USHBP1-202ENST00000324554 ESDP10768 282 aa13.01□□□□□ -0.33
USHBP1-202ENST00000324554 CD69Q07108 199 aa13.01□□□□□ -0.33
USHBP1-202ENST00000324554 VKORC1Q9BQB6 163 aa13.01□□□□□ -0.33
USHBP1-202ENST00000324554 TECRQ9NZ01 308 aaKnown RBP13.01□□□□□ -0.33
USHBP1-202ENST00000324554 PPIAL4AQ9Y536 164 aa13.01□□□□□ -0.33
USHBP1-202ENST00000324554 TPPP2P59282 170 aa13.01□□□□□ -0.33
USHBP1-202ENST00000324554 RPL8P62917 257 aaKnown RBP13.01□□□□□ -0.33
USHBP1-202ENST00000324554 FXYD3Q14802 87 aa13.01□□□□□ -0.33
USHBP1-202ENST00000324554 TMEM177Q53S58 311 aa13.01□□□□□ -0.33
USHBP1-202ENST00000324554 ATG101Q9BSB4 218 aa13.01□□□□□ -0.33
USHBP1-202ENST00000324554 COMMD5Q9GZQ3 224 aa13.01□□□□□ -0.33
USHBP1-202ENST00000324554 ARFGEF3Q5TH69 2177 aa13.01□□□□□ -0.33
USHBP1-202ENST00000324554 E7EUB6 86 aa13□□□□□ -0.33
USHBP1-202ENST00000324554 OR5G3P0C626 314 aa13□□□□□ -0.33
USHBP1-202ENST00000324554 CDKN1AP38936 164 aa13□□□□□ -0.33
USHBP1-202ENST00000324554 MORN5Q5VZ52 161 aa13□□□□□ -0.33
USHBP1-202ENST00000324554 CCL17Q92583 94 aa13□□□□□ -0.33
USHBP1-202ENST00000324554 CACNA1AO00555 2505 aa13□□□□□ -0.33
USHBP1-202ENST00000324554 PKD1L2Q7Z442 2459 aa13□□□□□ -0.33
USHBP1-202ENST00000324554 NUTF2P61970 127 aaKnown RBP13□□□□□ -0.33
USHBP1-202ENST00000324554 PAFAH1B2P68402 229 aa13□□□□□ -0.33
USHBP1-202ENST00000324554 SLC35B1P78383 322 aa13□□□□□ -0.33
USHBP1-202ENST00000324554 DIAPH2-AS1Q14236 149 aa13□□□□□ -0.33
USHBP1-202ENST00000324554 TPTE2P1Q5T6R2 138 aa13□□□□□ -0.33
USHBP1-202ENST00000324554 LYPD2Q6UXB3 125 aa13□□□□□ -0.33
USHBP1-202ENST00000324554 TOMM20LQ6UXN7 152 aa13□□□□□ -0.33
USHBP1-202ENST00000324554 PNKDQ8N490 385 aa13□□□□□ -0.33
USHBP1-202ENST00000324554 LINC01560Q8TB33 94 aa13□□□□□ -0.33
USHBP1-202ENST00000324554 H1FXQ92522 213 aaKnown RBP13□□□□□ -0.33
USHBP1-202ENST00000324554 FLYWCH2Q96CP2 140 aaKnown RBP13□□□□□ -0.33
USHBP1-202ENST00000324554 HSPB9Q9BQS6 159 aa13□□□□□ -0.33
USHBP1-202ENST00000324554 IGLV2-8P01709 118 aa12.99□□□□□ -0.33
USHBP1-202ENST00000324554 SUMO1P63165 101 aaKnown RBP12.99□□□□□ -0.33
USHBP1-202ENST00000324554 BAGE3Q86Y29 109 aa12.99□□□□□ -0.33
USHBP1-202ENST00000324554 BAGE2Q86Y30 109 aa12.99□□□□□ -0.33
USHBP1-202ENST00000324554 C19orf24Q9BVV8 132 aa12.99□□□□□ -0.33
USHBP1-202ENST00000324554 TNFRSF13BO14836 293 aaPredicted RBP12.99□□□□□ -0.33
USHBP1-202ENST00000324554 CASP6P55212 293 aa12.99□□□□□ -0.33
USHBP1-202ENST00000324554 OR4C13Q8NGP0 309 aa12.99□□□□□ -0.33
USHBP1-202ENST00000324554 OR10X1Q8NGY0 326 aa12.99□□□□□ -0.33
USHBP1-202ENST00000324554 GNB1LQ9BYB4 327 aa12.99□□□□□ -0.33
USHBP1-202ENST00000324554 TRAV5A0A0B4J249 113 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 INS-IGF2F8WCM5 200 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 USF1P22415 310 aaPredicted RBP12.98□□□□□ -0.33
USHBP1-202ENST00000324554 TCL1AP56279 114 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 CX3CL1P78423 397 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 ERHP84090 104 aaKnown RBP12.98□□□□□ -0.33
USHBP1-202ENST00000324554 Q0VG73 95 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 OR2T6Q8NHC8 308 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 TMEM167AQ8TBQ9 72 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 CACNG8Q8WXS5 425 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 SLC25A33Q9BSK2 321 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 GNB4Q9HAV0 340 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 CTSZQ9UBR2 303 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 RNF114Q9Y508 228 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 COL12A1Q99715 3063 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 NDUFB3O43676 98 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 CA7P43166 264 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 TAS2R45P59539 299 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 RANP62826 216 aaKnown RBP12.98□□□□□ -0.33
USHBP1-202ENST00000324554 TIGITQ495A1 244 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 ASPHD1Q5U4P2 390 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 PDPNQ86YL7 162 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 ZNF596Q8TC21 504 aa12.98□□□□□ -0.33
USHBP1-202ENST00000324554 PSMB11A5LHX3 300 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 CGB1A6NKQ9 187 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 SSBP2P81877 361 aaPredicted RBP12.97□□□□□ -0.33
USHBP1-202ENST00000324554 KIAA1644Q3SXP7 199 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 LRRC10Q5BKY1 277 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 FAM71F2Q6NXP2 309 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 TEX43Q6ZNM6 134 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 OR5AU1Q8NGC0 362 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 ST6GALNAC6Q969X2 333 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 IGF2BP2-AS1Q96M15 143 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 NEU1Q99519 415 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 OSTCQ9NRP0 149 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 NAT8BQ9UHF3 227 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 RALYQ9UKM9 306 aaKnown RBP12.97□□□□□ -0.33
USHBP1-202ENST00000324554 TRBV9A0A0B4J1U6 114 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 TCAPO15273 167 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 C8orf88P0DMB2 117 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 WT1-ASQ06250 92 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 C10orf55Q5SWW7 151 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 TMEM136Q6ZRR5 245 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 LINC00311Q8N616 119 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 OR4A5Q8NH83 315 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 RNASE6Q93091 150 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms