RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 HELZ2Q9BYK8 2649 aaKnown RBP3.4□□□□□ -1.87
CD44-202ENST00000278385 SHANK1Q9Y566 2161 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 RELNP78509 3460 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 MEIKINA0A087WXM9 373 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 NKX2-6A6NCS4 301 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 C19orf84I3L1E1 186 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 AIPO00170 330 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 ISLRO14498 428 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 UBFD1O14562 309 aaKnown RBP3.39□□□□□ -1.87
CD44-202ENST00000278385 GYG2O15488 501 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 TCF21O43680 179 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 SNRNP200O75643 2136 aaKnown RBP3.39□□□□□ -1.87
CD44-202ENST00000278385 HLA-DRB1P01911 266 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 OR12D1P0DN82 309 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 RPL7P18124 248 aaKnown RBP3.39□□□□□ -1.87
CD44-202ENST00000278385 SRIP30626 198 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 VEGFCP49767 419 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 LHX2P50458 406 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 FOXA1P55317 472 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 UBE2NP61088 152 aaKnown RBP3.39□□□□□ -1.87
CD44-202ENST00000278385 MEF2CQ06413 473 aaPredicted RBP3.39□□□□□ -1.87
CD44-202ENST00000278385 PLCXD2Q0VAA5 305 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 KIAA0040Q15053 153 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 MORN2Q502X0 79 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 TNFAIP8L3Q5GJ75 292 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 C9orf66Q5T8R8 295 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 GFI1BQ5VTD9 330 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 GLYATQ6IB77 296 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 NOXRED1Q6NXP6 359 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 ZNF613Q6PF04 617 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 HAGHLQ6PII5 290 aaPredicted RBP3.39□□□□□ -1.87
CD44-202ENST00000278385 PLET1Q6UQ28 207 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 ATP5L2Q7Z4Y8 100 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 ANKRD29Q8N6D5 301 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 SLC30A7Q8NEW0 376 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 OR5A1Q8NGJ0 315 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 OR51H1Q8NH63 302 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 VN1R17PQ8TDU5 208 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 ACOT12Q8WYK0 555 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 RPUSD4Q96CM3 377 aaKnown RBP3.39□□□□□ -1.87
CD44-202ENST00000278385 MALSU1Q96EH3 234 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 TMEM243Q9BU79 118 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 SAMD10Q9BYL1 202 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 C20orf27Q9GZN8 174 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 PBOV1Q9GZY1 135 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 PARP11Q9NR21 331 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 GNG8Q9UK08 70 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 POMPQ9Y244 141 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 F11RQ9Y624 299 aaKnown RBP3.39□□□□□ -1.87
CD44-202ENST00000278385 PXMP4Q9Y6I8 212 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 ENPP4Q9Y6X5 453 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 SPENQ96T58 3664 aaKnown RBP3.39□□□□□ -1.87
CD44-202ENST00000278385 KALRNO60229 2985 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 DYSFO75923 2080 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 HEATR5BQ9P2D3 2071 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 POLEQ07864 2286 aa3.39□□□□□ -1.87
CD44-202ENST00000278385 MYO18BQ8IUG5 2567 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 CCDC88CQ9P219 2028 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 F5H5P2 479 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 TMEM250H0YL14 139 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 SLC22A1O15245 554 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 ANGPTL7O43827 346 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 CDS2O95674 445 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 ZNF682O95780 498 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 FAM107AO95990 144 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 CNTFRP26992 372 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 GABRA3P34903 492 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 OPRM1P35372 400 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 G6PCP35575 357 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 POLR2HP52434 150 aaKnown RBP3.38□□□□□ -1.87
CD44-202ENST00000278385 MP68P56378 58 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 DSCR4P56555 118 aaPredicted RBP3.38□□□□□ -1.87
CD44-202ENST00000278385 DEFA1P59665 94 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 TFF3Q07654 80 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 RBMY1FQ15415 496 aaKnown RBP3.38□□□□□ -1.87
CD44-202ENST00000278385 NNATQ16517 81 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 COA6Q5JTJ3 125 aaKnown RBP3.38□□□□□ -1.87
CD44-202ENST00000278385 ACP7Q6ZNF0 438 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 TCF23Q7RTU1 214 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 FAM19A3Q7Z5A8 133 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 PRNTQ86SH4 94 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 CROCCP2Q86T23 111 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 SGPP2Q8IWX5 399 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 TMEM61Q8N0U2 210 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 C4orf33Q8N1A6 199 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 RPRMLQ8N4K4 120 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 RNASE6Q93091 150 aaKnown RBP3.38□□□□□ -1.87
CD44-202ENST00000278385 NARS2Q96I59 477 aaKnown RBP3.38□□□□□ -1.87
CD44-202ENST00000278385 TMEM101Q96IK0 257 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 KCNS1Q96KK3 526 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 PPP3R2Q96LZ3 170 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 OR2M2Q96R28 347 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 ZNF649Q9BS31 505 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 POLR2J2Q9GZM3 115 aaKnown RBP3.38□□□□□ -1.87
CD44-202ENST00000278385 POLR2J3Q9H1A7 115 aaKnown RBP3.38□□□□□ -1.87
CD44-202ENST00000278385 VCXQ9H320 206 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 PTGES2Q9H7Z7 377 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 GPR84Q9NQS5 396 aa3.38□□□□□ -1.87
CD44-202ENST00000278385 ZNF331Q9NQX6 463 aaPredicted RBP3.38□□□□□ -1.87
CD44-202ENST00000278385 LINC00527Q9UJ94 153 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms