RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 CEBPZOSA8MTT3 80 aa17.19■□□□□ 0.34
LSM4-201ENST00000252816 YIF1AO95070 293 aa17.19■□□□□ 0.34
LSM4-201ENST00000252816 HTR2BP41595 481 aa17.19■□□□□ 0.34
LSM4-201ENST00000252816 NPBWR1P48145 328 aa17.19■□□□□ 0.34
LSM4-201ENST00000252816 LINC00322Q6ZN03 302 aaPredicted RBP17.19■□□□□ 0.34
LSM4-201ENST00000252816 RBPMS2Q6ZRY4 209 aaKnown RBP17.19■□□□□ 0.34
LSM4-201ENST00000252816 OR52B4Q8NGK2 314 aa17.19■□□□□ 0.34
LSM4-201ENST00000252816 OR10C1Q96KK4 312 aa17.19■□□□□ 0.34
LSM4-201ENST00000252816 NBEAL2Q6ZNJ1 2754 aa17.18■□□□□ 0.34
LSM4-201ENST00000252816 RBMY1BA6NDE4 496 aaKnown RBP17.18■□□□□ 0.34
LSM4-201ENST00000252816 RBMY1EA6NEQ0 496 aaKnown RBP17.18■□□□□ 0.34
LSM4-201ENST00000252816 TMEM50AO95807 157 aa17.18■□□□□ 0.34
LSM4-201ENST00000252816 RBMY1DP0C7P1 496 aaKnown RBP17.18■□□□□ 0.34
LSM4-201ENST00000252816 OPRK1P41145 380 aa17.18■□□□□ 0.34
LSM4-201ENST00000252816 CCR6P51684 374 aa17.18■□□□□ 0.34
LSM4-201ENST00000252816 SRPXP78539 464 aa17.18■□□□□ 0.34
LSM4-201ENST00000252816 ANKRD55Q3KP44 614 aa17.18■□□□□ 0.34
LSM4-201ENST00000252816 SLC16A13Q7RTY0 426 aa17.18■□□□□ 0.34
LSM4-201ENST00000252816 TMEM170AQ8WVE7 144 aa17.18■□□□□ 0.34
LSM4-201ENST00000252816 SMPXQ9UHP9 88 aa17.18■□□□□ 0.34
LSM4-201ENST00000252816 TNFRSF9Q07011 255 aa17.17■□□□□ 0.34
LSM4-201ENST00000252816 SMCO1Q147U7 214 aa17.17■□□□□ 0.34
LSM4-201ENST00000252816 C2orf83Q53S99 150 aa17.17■□□□□ 0.34
LSM4-201ENST00000252816 TRIQKQ629K1 86 aa17.17■□□□□ 0.34
LSM4-201ENST00000252816 TOMM20LQ6UXN7 152 aa17.17■□□□□ 0.34
LSM4-201ENST00000252816 SRD5A3Q9H8P0 318 aa17.17■□□□□ 0.34
LSM4-201ENST00000252816 IGHV3-49A0A0A0MS15 119 aa17.16■□□□□ 0.34
LSM4-201ENST00000252816 IGHV7-4-1A0A0J9YVY3 117 aa17.16■□□□□ 0.34
LSM4-201ENST00000252816 TSPAN4O14817 238 aa17.16■□□□□ 0.34
LSM4-201ENST00000252816 VAMP1P23763 118 aa17.16■□□□□ 0.34
LSM4-201ENST00000252816 PPP1R1AQ13522 171 aa17.16■□□□□ 0.34
LSM4-201ENST00000252816 SLC24A4Q8NFF2 622 aa17.16■□□□□ 0.34
LSM4-201ENST00000252816 OR4X1Q8NH49 305 aa17.16■□□□□ 0.34
LSM4-201ENST00000252816 HSPB7Q9UBY9 170 aa17.16■□□□□ 0.34
LSM4-201ENST00000252816 LINC00854A0A1B0GVQ3 168 aa17.15■□□□□ 0.34
LSM4-201ENST00000252816 CHEK1O14757 476 aa17.15■□□□□ 0.34
LSM4-201ENST00000252816 CLN5O75503 358 aa17.15■□□□□ 0.34
LSM4-201ENST00000252816 RBMS2Q15434 407 aaKnown RBP17.15■□□□□ 0.34
LSM4-201ENST00000252816 TMEM116Q8NCL8 245 aa17.15■□□□□ 0.34
LSM4-201ENST00000252816 SPAG8Q99932 426 aaPredicted RBP17.15■□□□□ 0.34
LSM4-201ENST00000252816 RHPN1-AS1Q9BWJ2 59 aa17.15■□□□□ 0.34
LSM4-201ENST00000252816 CACFD1Q9UGQ2 172 aa17.15■□□□□ 0.34
LSM4-201ENST00000252816 PUS1Q9Y606 427 aaKnown RBP eCLIP17.15■□□□□ 0.34
LSM4-201ENST00000252816 A0A1B0GU03 582 aa17.14■□□□□ 0.33
LSM4-201ENST00000252816 SFT2D2O95562 160 aa17.14■□□□□ 0.33
LSM4-201ENST00000252816 INPP1P49441 399 aa17.14■□□□□ 0.33
LSM4-201ENST00000252816 LAMTOR1Q6IAA8 161 aa17.14■□□□□ 0.33
LSM4-201ENST00000252816 ZNF600Q6ZNG1 722 aa17.14■□□□□ 0.33
LSM4-201ENST00000252816 CENPSQ8N2Z9 138 aa17.14■□□□□ 0.33
LSM4-201ENST00000252816 LRTM2Q8N967 370 aa17.14■□□□□ 0.33
LSM4-201ENST00000252816 RNF2Q99496 336 aa17.14■□□□□ 0.33
LSM4-201ENST00000252816 RBKSQ9H477 322 aa17.14■□□□□ 0.33
LSM4-201ENST00000252816 ZFAND3Q9H8U3 227 aa17.14■□□□□ 0.33
LSM4-201ENST00000252816 IGHV3OR16-13A0A075B7E8 117 aa17.13■□□□□ 0.33
LSM4-201ENST00000252816 TRAV14DV4A0A0A6YYC5 116 aa17.13■□□□□ 0.33
LSM4-201ENST00000252816 IGHV3-74A0A0B4J1X5 117 aa17.13■□□□□ 0.33
LSM4-201ENST00000252816 DUXBA0A1W2PPF3 345 aa17.13■□□□□ 0.33
LSM4-201ENST00000252816 NAP1L6A6NFF2 107 aa17.13■□□□□ 0.33
LSM4-201ENST00000252816 NPY1RP25929 384 aa17.13■□□□□ 0.33
LSM4-201ENST00000252816 RNASEH2CQ8TDP1 164 aaKnown RBP17.13■□□□□ 0.33
LSM4-201ENST00000252816 SPATA25Q9BR10 227 aa17.13■□□□□ 0.33
LSM4-201ENST00000252816 HIPK2Q9H2X6 1198 aa17.13■□□□□ 0.33
LSM4-201ENST00000252816 DNAH7Q8WXX0 4024 aa17.12■□□□□ 0.33
LSM4-201ENST00000252816 RPS10-NUDT3A0A1W2PQS6 291 aa17.12■□□□□ 0.33
LSM4-201ENST00000252816 PITX3O75364 302 aa17.12■□□□□ 0.33
LSM4-201ENST00000252816 NDUFB6O95139 128 aa17.12■□□□□ 0.33
LSM4-201ENST00000252816 IGKV1-17P01599 117 aa17.12■□□□□ 0.33
LSM4-201ENST00000252816 PRSS54Q6PEW0 395 aa17.12■□□□□ 0.33
LSM4-201ENST00000252816 OR1S1Q8NH92 325 aa17.12■□□□□ 0.33
LSM4-201ENST00000252816 DTD1Q8TEA8 209 aa17.12■□□□□ 0.33
LSM4-201ENST00000252816 CITED4Q96RK1 184 aa17.12■□□□□ 0.33
LSM4-201ENST00000252816 FLVCR2Q9UPI3 526 aa17.12■□□□□ 0.33
LSM4-201ENST00000252816 PIGBOS1A0A0B4J2F0 54 aa17.11■□□□□ 0.33
LSM4-201ENST00000252816 APOHP02749 345 aaPredicted RBP17.11■□□□□ 0.33
LSM4-201ENST00000252816 IL7P13232 177 aa17.11■□□□□ 0.33
LSM4-201ENST00000252816 BTCP35070 178 aa17.11■□□□□ 0.33
LSM4-201ENST00000252816 TIGITQ495A1 244 aa17.11■□□□□ 0.33
LSM4-201ENST00000252816 GINS3Q9BRX5 216 aa17.11■□□□□ 0.33
LSM4-201ENST00000252816 RETNQ9HD89 108 aa17.11■□□□□ 0.33
LSM4-201ENST00000252816 IFNA10P01566 189 aa17.1■□□□□ 0.33
LSM4-201ENST00000252816 RND2P52198 227 aa17.1■□□□□ 0.33
LSM4-201ENST00000252816 LILRB2Q8N423 598 aa17.1■□□□□ 0.33
LSM4-201ENST00000252816 ST8SIA2Q92186 375 aa17.1■□□□□ 0.33
LSM4-201ENST00000252816 UBQLN2Q9UHD9 624 aa17.1■□□□□ 0.33
LSM4-201ENST00000252816 U3KQ87 197 aa17.1■□□□□ 0.33
LSM4-201ENST00000252816 IGLC1P0CG04 106 aa17.09■□□□□ 0.33
LSM4-201ENST00000252816 SLC25A4P12235 298 aa17.09■□□□□ 0.33
LSM4-201ENST00000252816 SLC25A6P12236 298 aa17.09■□□□□ 0.33
LSM4-201ENST00000252816 UBE2MP61081 183 aaKnown RBP17.09■□□□□ 0.33
LSM4-201ENST00000252816 ODF3L2Q3SX64 289 aa17.09■□□□□ 0.33
LSM4-201ENST00000252816 FAM90A2PQ658T7 463 aa17.09■□□□□ 0.33
LSM4-201ENST00000252816 VSIRQ9H7M9 311 aa17.09■□□□□ 0.33
LSM4-201ENST00000252816 IGHV3-66A0A0C4DH42 116 aa17.08■□□□□ 0.32
LSM4-201ENST00000252816 HOXB5P09067 269 aa17.08■□□□□ 0.32
LSM4-201ENST00000252816 NOXA1Q86UR1 476 aa17.08■□□□□ 0.32
LSM4-201ENST00000252816 TMED3Q9Y3Q3 217 aa17.08■□□□□ 0.32
LSM4-201ENST00000252816 TRAV30A0A087WSZ9 112 aa17.07■□□□□ 0.32
LSM4-201ENST00000252816 C9orf170A2RU37 121 aa17.07■□□□□ 0.32
LSM4-201ENST00000252816 OR4C46A6NHA9 309 aa17.07■□□□□ 0.32
LSM4-201ENST00000252816 GGNBP1Q5YKI7 109 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms