RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 FOXF2Q12947 444 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 SLC25A26Q70HW3 274 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 PDPNQ86YL7 162 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 DNAJC19Q96DA6 116 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 PGLYRP2Q96PD5 576 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 GYPAP02724 150 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 LIFP15018 202 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 CNTFRP26992 372 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 TRIP6Q15654 476 aaKnown RBP2.98□□□□□ -1.93
SCN1A-221ENST00000641996 Q499Y3 187 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 LYPD6Q86Y78 171 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 MAL2Q969L2 176 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 UBE2E2Q96LR5 201 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 ZNF681Q96N22 645 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 FANCD2Q9BXW9 1451 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 TLCD2A6NGC4 264 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 CD300LBA8K4G0 201 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 H3BMG7 143 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 BLVRBP30043 206 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-221ENST00000641996 GZMMP51124 257 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 PAX8Q06710 450 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 TMEM150AQ86TG1 271 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 ZNF501Q96CX3 271 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-221ENST00000641996 TM2D1Q9BX74 207 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 BCL2P10415 239 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 TMEM170AQ8WVE7 144 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 GATA5Q9BWX5 397 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-221ENST00000641996 CEP295Q9C0D2 2601 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 PGFP49763 221 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 NSUN5P1Q3KNT7 163 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 FOXQ1Q9C009 403 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 PAX4O43316 350 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 EIF4EBP2Q13542 120 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-221ENST00000641996 MRPL30Q8TCC3 161 aaKnown RBP2.97□□□□□ -1.93
SCN1A-221ENST00000641996 PREX1Q8TCU6 1659 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-221ENST00000641996 K7N7A8 449 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 SSSCA1O60232 199 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 C1QL3Q5VWW1 255 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 C9orf57Q5W0N0 161 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 CFTRP13569 1480 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 KDM5CP41229 1560 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 IGLC2P0DOY2 106 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 IGLC3P0DOY3 106 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 CD164L2Q6UWJ8 174 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 AMTNQ6UX39 209 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 C20orf78Q9BR46 151 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 IGHV1-45A0A0A0MS14 117 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 ZNF324BQ6AW86 544 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-221ENST00000641996 TIMM17AQ99595 171 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 IL17CQ9P0M4 197 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 A2MP01023 1474 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 LMO7DNF2Z398 122 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 FGF3P11487 239 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-221ENST00000641996 ATP7BP35670 1465 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 SGSHP51688 502 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 CTXN1P60606 82 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 MAGI2Q86UL8 1455 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 ZCCHC24Q8N2G6 241 aaKnown RBP2.97□□□□□ -1.93
SCN1A-221ENST00000641996 DCAF4L2Q8NA75 395 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 LMO3Q8TAP4 145 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 RASL10BQ96S79 203 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 AKAP13Q12802 2813 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 SMIM28A0A1B0GU29 152 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 FAM157AC9JC47 383 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 SUMO2P61956 95 aaKnown RBP2.97□□□□□ -1.93
SCN1A-221ENST00000641996 TCP10Q12799 353 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 ZNF645Q8N7E2 425 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 OTORQ9NRC9 128 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 CNTNAP5Q8WYK1 1306 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 HOXB4P17483 251 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-221ENST00000641996 PRSS3P35030 304 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 RPL38P63173 70 aaKnown RBP2.97□□□□□ -1.93
SCN1A-221ENST00000641996 RPS27LQ71UM5 84 aaKnown RBP2.97□□□□□ -1.93
SCN1A-221ENST00000641996 IGHV2-26A0A0B4J1V2 119 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 ZNF737O75373 536 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 HOXB6P17509 224 aaKnown RBP2.97□□□□□ -1.93
SCN1A-221ENST00000641996 SAP25Q8TEE9 199 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 SLC25A38Q96DW6 304 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 MLST8Q9BVC4 326 aa2.97□□□□□ -1.93
SCN1A-221ENST00000641996 DNAJB12Q9NXW2 375 aaKnown RBP2.97□□□□□ -1.93
SCN1A-221ENST00000641996 NEO1Q92859 1461 aa2.96□□□□□ -1.93
SCN1A-221ENST00000641996 MYBPHLA2RUH7 354 aa2.96□□□□□ -1.93
SCN1A-221ENST00000641996 PTHLHP12272 177 aa2.96□□□□□ -1.93
SCN1A-221ENST00000641996 CXCL5P42830 114 aa2.96□□□□□ -1.93
SCN1A-221ENST00000641996 ZNF345Q14585 488 aa2.96□□□□□ -1.93
SCN1A-221ENST00000641996 POP5Q969H6 163 aaKnown RBP2.96□□□□□ -1.93
SCN1A-221ENST00000641996 IGHV1OR15-9A0A0B4J2B8 117 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 PLAC8L1A1L4L8 177 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 UPK1AO00322 258 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 DAZ2Q13117 558 aaKnown RBP2.96□□□□□ -1.94
SCN1A-221ENST00000641996 TMEM255AQ5JRV8 349 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 DAZ4Q86SG3 579 aaKnown RBP2.96□□□□□ -1.94
SCN1A-221ENST00000641996 DAZ1Q9NQZ3 744 aaKnown RBP2.96□□□□□ -1.94
SCN1A-221ENST00000641996 DAZ3Q9NR90 486 aaKnown RBP2.96□□□□□ -1.94
SCN1A-221ENST00000641996 TMEM242Q9NWH2 141 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 ZNF823P16415 610 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 SMIM11AP58511 58 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 NOXRED1Q6NXP6 359 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 C5orf66Q9H5L9 145 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms