RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 TEN1Q86WV5 123 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 ZNF815PA8K554 130 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 AHRRA9YTQ3 701 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 MFAP4P55083 255 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 CENPVQ7Z7K6 275 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-220ENST00000641603 IGKV1D-16P01601 117 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 C2orf82Q6UX34 121 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 RNF182Q8N6D2 247 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 UNC13CQ8NB66 2214 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 ATOX1O00244 68 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 EVI2AP22794 236 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 TMEM95Q3KNT9 176 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 C19orf54Q5BKX5 351 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 DUSP15Q9H1R2 295 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-220ENST00000641603 C22orf46C9J442 243 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 UPK2O00526 184 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 PRSS2P07478 247 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 EFNB3Q15768 340 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 FBXL15Q9H469 300 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 LILRA1O75019 489 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 RPL15P61313 204 aaKnown RBP3.92□□□□□ -1.78
SCN1A-220ENST00000641603 TMEM171Q8WVE6 324 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 HEATR1Q9H583 2144 aaKnown RBP3.92□□□□□ -1.78
SCN1A-220ENST00000641603 SCN3AQ9NY46 2000 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 G3V4G9 280 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 NCOR1O75376 2440 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 GGTLC3B5MD39 225 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 CELA2BP08218 269 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-220ENST00000641603 CCL5P13501 91 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 GLMPQ8WWB7 406 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 COQ2Q96H96 371 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 CCL26Q9Y258 94 aa3.92□□□□□ -1.78
SCN1A-220ENST00000641603 GFRA1P56159 465 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 RPL11P62913 178 aaKnown RBP3.91□□□□□ -1.78
SCN1A-220ENST00000641603 RNF166Q96A37 237 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-220ENST00000641603 PGPEP1Q9NXJ5 209 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 CALYQ9NYX4 217 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 FOXH1O75593 365 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 MGPP08493 103 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 GOLT1AQ6ZVE7 132 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 Q71RC1 249 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-220ENST00000641603 A0A096LPE4 126 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 A0A1W2PPZ6 126 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 MOSP00540 346 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 IGHV3-7P01780 117 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 ZNF83P51522 516 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 METTL26Q96S19 204 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 FOXA2Q9Y261 457 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-220ENST00000641603 WDR82Q6UXN9 313 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 Q6ZS92 163 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 NUP37Q8NFH4 326 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 GREB1LQ9C091 1923 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-220ENST00000641603 PRCDQ00LT1 54 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 TFF3Q07654 80 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 RNASE8Q8TDE3 154 aaKnown RBP3.91□□□□□ -1.78
SCN1A-220ENST00000641603 DIDO1Q9BTC0 2240 aaKnown RBP3.91□□□□□ -1.78
SCN1A-220ENST00000641603 RGPD3A6NKT7 1758 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-220ENST00000641603 RGPD4Q7Z3J3 1758 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 CEACAM8P31997 349 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-220ENST00000641603 CDCP2Q5VXM1 449 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 LINC00305Q7Z4B0 112 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 TDRD15B5MCY1 1934 aaKnown RBP3.91□□□□□ -1.78
SCN1A-220ENST00000641603 SLC25A16P16260 332 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 EGR4Q05215 589 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 PRSS8Q16651 343 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 LILRA6Q6PI73 481 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 TREML4Q6UXN2 200 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 RFESDQ8TAC1 157 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 RASL10BQ96S79 203 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 NUP205Q92621 2012 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 A0A1W2PQF6 199 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 SMIM27A0A1W2PRY6 76 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 FABP5P3A8MUU1 101 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 SPINK9Q5DT21 86 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 SPATA12Q7Z6I5 190 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 ST6GALNAC3Q8NDV1 305 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 ST6GALNAC6Q969X2 333 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 C1QTNF5Q9BXJ0 243 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 A0A1W2PPI3 338 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 HAX1O00165 279 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 TIMM23O14925 209 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 PEBP1P30086 187 aaKnown RBP3.91□□□□□ -1.78
SCN1A-220ENST00000641603 TMEM170BQ5T4T1 132 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 SRSF8Q9BRL6 282 aaKnown RBP3.91□□□□□ -1.78
SCN1A-220ENST00000641603 SBF2Q86WG5 1849 aa3.91□□□□□ -1.78
SCN1A-220ENST00000641603 SHISA7A6NL88 538 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 CRYBA4P53673 196 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 PSG4Q00888 419 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 PRSS41Q7RTY9 318 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 ZNF236Q9UL36 1845 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 IGLC1P0CG04 106 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 RBX1P62877 108 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 SRSF2Q01130 221 aaKnown RBP3.9□□□□□ -1.78
SCN1A-220ENST00000641603 FAM57AQ8TBR7 257 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 CFHR5Q9BXR6 569 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 LIME1Q9H400 295 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 SLC25A15Q9Y619 301 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 ANKRD36A6QL64 1941 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 RALGAPA2Q2PPJ7 1873 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 DEFB108AA8MXU0 73 aa3.9□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms