RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 GNG5P63218 68 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 ZNF295-AS1Q8N0V1 137 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 ZNF891A8MT65 544 aaPredicted RBP9.16□□□□□ -0.94
CLN3-244ENST00000636147 MGST3O14880 152 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 RBP4P02753 201 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 DUTP33316 252 aaKnown RBP9.16□□□□□ -0.94
CLN3-244ENST00000636147 NMUP48645 174 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 B3GALT5-AS1P59052 145 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 LYZP61626 148 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 ACP7Q6ZNF0 438 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 TSKUQ8WUA8 353 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 LINC00470Q9BZP3 86 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 CALYQ9NYX4 217 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 EML6Q6ZMW3 1958 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 CNIH1O95406 144 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 KIR2DS2P43631 304 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 TBR1Q16650 682 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 ZNF766Q5HY98 468 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 PRNTQ86SH4 94 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 GAL3ST2Q9H3Q3 398 aa9.16□□□□□ -0.94
CLN3-244ENST00000636147 TRAV9-1A0A075B6T8 112 aa9.15□□□□□ -0.94
CLN3-244ENST00000636147 LOC102723996A0A087X1L8 192 aa9.15□□□□□ -0.94
CLN3-244ENST00000636147 IGHV3-72A0A0B4J1Y9 119 aa9.15□□□□□ -0.94
CLN3-244ENST00000636147 TEX50A0A1B0GTY4 177 aa9.15□□□□□ -0.94
CLN3-244ENST00000636147 hADV38S2A0JD32 116 aa9.15□□□□□ -0.94
CLN3-244ENST00000636147 CX3CL1P78423 397 aa9.15□□□□□ -0.94
CLN3-244ENST00000636147 GAGE1Q13065 139 aa9.15□□□□□ -0.94
CLN3-244ENST00000636147 TM4SF20Q53R12 229 aa9.15□□□□□ -0.94
CLN3-244ENST00000636147 OSTCQ9NRP0 149 aa9.15□□□□□ -0.94
CLN3-244ENST00000636147 IZUMO1RA6ND01 250 aa9.15□□□□□ -0.94
CLN3-244ENST00000636147 CCL25O15444 150 aa9.15□□□□□ -0.94
CLN3-244ENST00000636147 PSG1P11464 419 aa9.15□□□□□ -0.94
CLN3-244ENST00000636147 CEACAM8P31997 349 aaPredicted RBP9.15□□□□□ -0.94
CLN3-244ENST00000636147 CSN1S1P47710 185 aa9.15□□□□□ -0.94
CLN3-244ENST00000636147 CCL13Q99616 98 aa9.15□□□□□ -0.94
CLN3-244ENST00000636147 CD24P25063 80 aa9.15□□□□□ -0.95
CLN3-244ENST00000636147 ZNF138P52744 262 aa9.15□□□□□ -0.95
CLN3-244ENST00000636147 COLCA1Q6ZS62 124 aa9.15□□□□□ -0.95
CLN3-244ENST00000636147 COX11Q9Y6N1 276 aa9.15□□□□□ -0.95
CLN3-244ENST00000636147 NOTCH3Q9UM47 2321 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.14□□□□□ -0.95
CLN3-244ENST00000636147 MOSP00540 346 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 CRYABP02511 175 aaKnown RBP9.14□□□□□ -0.95
CLN3-244ENST00000636147 FAM87AP0C7U9 286 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 TDGF1P13385 188 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 OR10J3Q5JRS4 329 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 HILPDAQ9Y5L2 63 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 F11RQ9Y624 299 aaKnown RBP9.14□□□□□ -0.95
CLN3-244ENST00000636147 K7EQM0 130 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 MLNRO43193 412 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 GFRA3O60609 400 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 TNFSF15O95150 251 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 FNDC4Q9H6D8 234 aaPredicted RBP9.14□□□□□ -0.95
CLN3-244ENST00000636147 HSPB8Q9UJY1 196 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 PROCRQ9UNN8 238 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 TRBV6-6A0A0A6YYG2 114 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 MUC21A0A0G2JKD1 596 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 MUC21A0A140T8X8 626 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 K7EN84 100 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 HLA-DRB1P01911 266 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 CLDN18P56856 261 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 Q0VG73 95 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 MUC21Q5SSG8 566 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 PEAR1Q5VY43 1037 aaPredicted RBP9.14□□□□□ -0.95
CLN3-244ENST00000636147 OR1L8Q8NGR8 309 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 ORAOV1Q8WV07 137 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 COQ2Q96H96 371 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 ADTRPQ96IZ2 230 aa9.14□□□□□ -0.95
CLN3-244ENST00000636147 VCANP13611 3396 aa9.13□□□□□ -0.95
CLN3-244ENST00000636147 A0A087X0K7 114 aa9.13□□□□□ -0.95
CLN3-244ENST00000636147 FAM181BA6NEQ2 426 aa9.13□□□□□ -0.95
CLN3-244ENST00000636147 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.13□□□□□ -0.95
CLN3-244ENST00000636147 DHRS13Q6UX07 377 aa9.13□□□□□ -0.95
CLN3-244ENST00000636147 TMEM116Q8NCL8 245 aa9.13□□□□□ -0.95
CLN3-244ENST00000636147 NUP210LQ5VU65 1888 aa9.13□□□□□ -0.95
CLN3-244ENST00000636147 RAB1CQ92928 201 aa9.13□□□□□ -0.95
CLN3-244ENST00000636147 COLQQ9Y215 455 aaPredicted RBP9.13□□□□□ -0.95
CLN3-244ENST00000636147 NKX6-3A6NJ46 265 aa9.13□□□□□ -0.95
CLN3-244ENST00000636147 ARF6P62330 175 aa9.13□□□□□ -0.95
CLN3-244ENST00000636147 HBBP68871 147 aa9.13□□□□□ -0.95
CLN3-244ENST00000636147 ZNF146Q15072 292 aa9.13□□□□□ -0.95
CLN3-244ENST00000636147 NRN1LQ496H8 165 aa9.13□□□□□ -0.95
CLN3-244ENST00000636147 ATP1A1-AS1Q5TC04 95 aa9.13□□□□□ -0.95
CLN3-244ENST00000636147 TMEM144Q7Z5S9 345 aa9.13□□□□□ -0.95
CLN3-244ENST00000636147 TDHQ8IZJ6 230 aa9.13□□□□□ -0.95
CLN3-244ENST00000636147 OR10W1Q8NGF6 305 aa9.13□□□□□ -0.95
CLN3-244ENST00000636147 ITLN1Q8WWA0 313 aa9.13□□□□□ -0.95
CLN3-244ENST00000636147 A0A1W2PN81 502 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 PEX7O00628 323 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 IGLL1P15814 213 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 SLAQ13239 276 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 MORN2Q502X0 79 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 INO80CQ6PI98 192 aaPredicted RBP9.12□□□□□ -0.95
CLN3-244ENST00000636147 MEGF9Q9H1U4 602 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 JPT1Q9UK76 154 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 C2orf16Q68DN1 1984 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 OR2T8A6NH00 312 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 VSTM5A8MXK1 200 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 CORTO00230 105 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 PLXNB1O43157 2135 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms