RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.92□□□□□ -0.18
CLN3-239ENST00000628023 TRBV7-1A0A0A6YYK4 115 aa13.92□□□□□ -0.18
CLN3-239ENST00000628023 INS-IGF2F8WCM5 200 aa13.92□□□□□ -0.18
CLN3-239ENST00000628023 ADAP1O75689 374 aa13.92□□□□□ -0.18
CLN3-239ENST00000628023 SLC25A6P12236 298 aa13.92□□□□□ -0.18
CLN3-239ENST00000628023 IGLL1P15814 213 aa13.92□□□□□ -0.18
CLN3-239ENST00000628023 HOXD3P31249 432 aaPredicted RBP13.92□□□□□ -0.18
CLN3-239ENST00000628023 MFAP2P55001 183 aa13.92□□□□□ -0.18
CLN3-239ENST00000628023 RPEL1Q2QD12 228 aa13.92□□□□□ -0.18
CLN3-239ENST00000628023 CLEC19AQ6UXS0 136 aa13.92□□□□□ -0.18
CLN3-239ENST00000628023 UXS1Q8NBZ7 420 aa13.92□□□□□ -0.18
CLN3-239ENST00000628023 ZNF431Q8TF32 576 aaPredicted RBP13.92□□□□□ -0.18
CLN3-239ENST00000628023 MITD1Q8WV92 249 aa13.92□□□□□ -0.18
CLN3-239ENST00000628023 HIPK2Q9H2X6 1198 aa13.92□□□□□ -0.18
CLN3-239ENST00000628023 IGHV3-21A0A0B4J1V1 117 aa13.91□□□□□ -0.18
CLN3-239ENST00000628023 DUSP18Q8NEJ0 188 aa13.91□□□□□ -0.18
CLN3-239ENST00000628023 VN1R17PQ8TDU5 208 aa13.91□□□□□ -0.18
CLN3-239ENST00000628023 DCUN1D4Q92564 292 aa13.91□□□□□ -0.18
CLN3-239ENST00000628023 PINX1Q96BK5 328 aaKnown RBP13.91□□□□□ -0.18
CLN3-239ENST00000628023 CCDC140Q96MF4 163 aa13.91□□□□□ -0.18
CLN3-239ENST00000628023 GPR61Q9BZJ8 451 aa13.91□□□□□ -0.18
CLN3-239ENST00000628023 HSPB7Q9UBY9 170 aa13.91□□□□□ -0.18
CLN3-239ENST00000628023 PPP5D1E7EU14 171 aa13.9□□□□□ -0.18
CLN3-239ENST00000628023 OVOL1O14753 267 aa13.9□□□□□ -0.18
CLN3-239ENST00000628023 RNASE2P10153 161 aaKnown RBP13.9□□□□□ -0.18
CLN3-239ENST00000628023 GPR183P32249 361 aa13.9□□□□□ -0.18
CLN3-239ENST00000628023 ARL3P36405 182 aa13.9□□□□□ -0.18
CLN3-239ENST00000628023 SLC24A4Q8NFF2 622 aa13.9□□□□□ -0.18
CLN3-239ENST00000628023 DTD1Q8TEA8 209 aa13.9□□□□□ -0.18
CLN3-239ENST00000628023 DLX4Q92988 240 aaPredicted RBP13.9□□□□□ -0.18
CLN3-239ENST00000628023 RBKSQ9H477 322 aa13.9□□□□□ -0.18
CLN3-239ENST00000628023 GPN1Q9HCN4 374 aaPredicted RBP13.9□□□□□ -0.18
CLN3-239ENST00000628023 C21orf62Q9NYP8 219 aa13.9□□□□□ -0.18
CLN3-239ENST00000628023 SEC14L6B5MCN3 397 aa13.89□□□□□ -0.19
CLN3-239ENST00000628023 FAM90A26D6RGX4 464 aa13.89□□□□□ -0.19
CLN3-239ENST00000628023 INMT-MINDY4F8WBC2 141 aa13.89□□□□□ -0.19
CLN3-239ENST00000628023 CORTO00230 105 aa13.89□□□□□ -0.19
CLN3-239ENST00000628023 BMPR1BO00238 502 aa13.89□□□□□ -0.19
CLN3-239ENST00000628023 MED6O75586 246 aa13.89□□□□□ -0.19
CLN3-239ENST00000628023 HTR2BP41595 481 aa13.89□□□□□ -0.19
CLN3-239ENST00000628023 Q56UQ5 140 aa13.89□□□□□ -0.19
CLN3-239ENST00000628023 C12orf45Q8N5I9 185 aaPredicted RBP13.89□□□□□ -0.19
CLN3-239ENST00000628023 UBAC2Q8NBM4 344 aa13.89□□□□□ -0.19
CLN3-239ENST00000628023 ZNF502Q8TBZ5 544 aa13.89□□□□□ -0.19
CLN3-239ENST00000628023 ZC4H2Q9NQZ6 224 aa13.89□□□□□ -0.19
CLN3-239ENST00000628023 MPTX1A8MV57 137 aa13.88□□□□□ -0.19
CLN3-239ENST00000628023 FAM25EA8MYX2 175 aa13.88□□□□□ -0.19
CLN3-239ENST00000628023 K7EIM0 57 aa13.88□□□□□ -0.19
CLN3-239ENST00000628023 GGCTO75223 188 aaKnown RBP13.88□□□□□ -0.19
CLN3-239ENST00000628023 PITX3O75364 302 aa13.88□□□□□ -0.19
CLN3-239ENST00000628023 MT-CO2P00403 227 aa13.88□□□□□ -0.19
CLN3-239ENST00000628023 IFNA10P01566 189 aa13.88□□□□□ -0.19
CLN3-239ENST00000628023 IL5P05113 134 aa13.88□□□□□ -0.19
CLN3-239ENST00000628023 CLEC3BP05452 202 aa13.88□□□□□ -0.19
CLN3-239ENST00000628023 TATDN3Q17R31 274 aa13.88□□□□□ -0.19
CLN3-239ENST00000628023 SCARB1Q8WTV0 552 aa13.88□□□□□ -0.19
CLN3-239ENST00000628023 OR2T8A6NH00 312 aa13.87□□□□□ -0.19
CLN3-239ENST00000628023 WRBO00258 174 aa13.87□□□□□ -0.19
CLN3-239ENST00000628023 PRAF2O60831 178 aa13.87□□□□□ -0.19
CLN3-239ENST00000628023 IAPPP10997 89 aa13.87□□□□□ -0.19
CLN3-239ENST00000628023 NPY1RP25929 384 aa13.87□□□□□ -0.19
CLN3-239ENST00000628023 OPRK1P41145 380 aa13.87□□□□□ -0.19
CLN3-239ENST00000628023 SYNJ2BPP57105 145 aa13.87□□□□□ -0.19
CLN3-239ENST00000628023 IAH1Q2TAA2 248 aaPredicted RBP13.87□□□□□ -0.19
CLN3-239ENST00000628023 C9orf66Q5T8R8 295 aa13.87□□□□□ -0.19
CLN3-239ENST00000628023 C11orf87Q6NUJ2 197 aa13.87□□□□□ -0.19
CLN3-239ENST00000628023 NOXA1Q86UR1 476 aa13.87□□□□□ -0.19
CLN3-239ENST00000628023 MAGT1Q9H0U3 335 aa13.87□□□□□ -0.19
CLN3-239ENST00000628023 PALMDQ9NP74 551 aa13.87□□□□□ -0.19
CLN3-239ENST00000628023 C5orf51A6NDU8 294 aa13.86□□□□□ -0.19
CLN3-239ENST00000628023 I3L2K1 104 aa13.86□□□□□ -0.19
CLN3-239ENST00000628023 CCSO14618 274 aa13.86□□□□□ -0.19
CLN3-239ENST00000628023 SCGB1D2O95969 90 aa13.86□□□□□ -0.19
CLN3-239ENST00000628023 IGHV3-48P01763 117 aa13.86□□□□□ -0.19
CLN3-239ENST00000628023 NKX2-1P43699 371 aaPredicted RBP13.86□□□□□ -0.19
CLN3-239ENST00000628023 C2orf83Q53S99 150 aa13.86□□□□□ -0.19
CLN3-239ENST00000628023 ELOVL1Q9BW60 279 aa13.86□□□□□ -0.19
CLN3-239ENST00000628023 GAR1Q9NY12 217 aaKnown RBP13.86□□□□□ -0.19
CLN3-239ENST00000628023 GSKIPQ9P0R6 139 aa13.86□□□□□ -0.19
CLN3-239ENST00000628023 U3KQ87 197 aa13.86□□□□□ -0.19
CLN3-239ENST00000628023 TGOLN2O43493 480 aa13.85□□□□□ -0.19
CLN3-239ENST00000628023 SYNGR2O43760 224 aa13.85□□□□□ -0.19
CLN3-239ENST00000628023 SAP30O75446 220 aa13.85□□□□□ -0.19
CLN3-239ENST00000628023 OR2C1O95371 312 aa13.85□□□□□ -0.19
CLN3-239ENST00000628023 PTTG1O95997 202 aa13.85□□□□□ -0.19
CLN3-239ENST00000628023 MFAP4P55083 255 aa13.85□□□□□ -0.19
CLN3-239ENST00000628023 KLF5Q13887 457 aaPredicted RBP13.85□□□□□ -0.19
CLN3-239ENST00000628023 BSXQ3C1V8 233 aa13.85□□□□□ -0.19
CLN3-239ENST00000628023 ACSM6Q6P461 480 aa13.85□□□□□ -0.19
CLN3-239ENST00000628023 BSCL2Q96G97 398 aaPredicted RBP13.85□□□□□ -0.19
CLN3-239ENST00000628023 CIB3Q96Q77 187 aaPredicted RBP13.85□□□□□ -0.19
CLN3-239ENST00000628023 MARVELD1Q9BSK0 173 aa13.85□□□□□ -0.19
CLN3-239ENST00000628023 PAIP2BQ9ULR5 123 aaKnown RBP13.85□□□□□ -0.19
CLN3-239ENST00000628023 RPS10-NUDT3A0A1W2PQS6 291 aa13.84□□□□□ -0.19
CLN3-239ENST00000628023 SPNP16150 400 aa13.84□□□□□ -0.19
CLN3-239ENST00000628023 RPP30P78346 268 aaKnown RBP13.84□□□□□ -0.19
CLN3-239ENST00000628023 DEFB121Q5J5C9 76 aa13.84□□□□□ -0.19
CLN3-239ENST00000628023 SPSB3Q6PJ21 355 aa13.84□□□□□ -0.19
CLN3-239ENST00000628023 ZBTB8BQ8NAP8 495 aaPredicted RBP13.84□□□□□ -0.19
CLN3-239ENST00000628023 OR9G4Q8NGQ1 327 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms