RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 NOXA1Q86UR1 476 aa14.76□□□□□ -0.05
SQSTM1-216ENST00000626660 ZBTB8BQ8NAP8 495 aaPredicted RBP14.76□□□□□ -0.05
SQSTM1-216ENST00000626660 VN1R17PQ8TDU5 208 aa14.76□□□□□ -0.05
SQSTM1-216ENST00000626660 OR10C1Q96KK4 312 aa14.76□□□□□ -0.05
SQSTM1-216ENST00000626660 CIB3Q96Q77 187 aaPredicted RBP14.76□□□□□ -0.05
SQSTM1-216ENST00000626660 GSKIPQ9P0R6 139 aa14.76□□□□□ -0.05
SQSTM1-216ENST00000626660 MGAM2Q2M2H8 2515 aa14.76□□□□□ -0.05
SQSTM1-216ENST00000626660 VWFP04275 2813 aa14.76□□□□□ -0.05
SQSTM1-216ENST00000626660 NOTCH3Q9UM47 2321 aa14.76□□□□□ -0.05
SQSTM1-216ENST00000626660 IGHV4OR15-8A0A075B7B6 117 aa14.75□□□□□ -0.05
SQSTM1-216ENST00000626660 A0A087WW49 117 aa14.75□□□□□ -0.05
SQSTM1-216ENST00000626660 MFSD2BA6NFX1 497 aa14.75□□□□□ -0.05
SQSTM1-216ENST00000626660 CORTO00230 105 aa14.75□□□□□ -0.05
SQSTM1-216ENST00000626660 SYNGR2O43760 224 aa14.75□□□□□ -0.05
SQSTM1-216ENST00000626660 LY86O95711 162 aa14.75□□□□□ -0.05
SQSTM1-216ENST00000626660 IFNA10P01566 189 aa14.75□□□□□ -0.05
SQSTM1-216ENST00000626660 CD33P20138 364 aa14.75□□□□□ -0.05
SQSTM1-216ENST00000626660 NKX2-1P43699 371 aaPredicted RBP14.75□□□□□ -0.05
SQSTM1-216ENST00000626660 FHL3Q13643 280 aa14.75□□□□□ -0.05
SQSTM1-216ENST00000626660 TATDN3Q17R31 274 aa14.75□□□□□ -0.05
SQSTM1-216ENST00000626660 GSG1LQ6UXU4 331 aa14.75□□□□□ -0.05
SQSTM1-216ENST00000626660 SLC24A4Q8NFF2 622 aa14.75□□□□□ -0.05
SQSTM1-216ENST00000626660 OR4D5Q8NGN0 318 aa14.75□□□□□ -0.05
SQSTM1-216ENST00000626660 MAGT1Q9H0U3 335 aa14.75□□□□□ -0.05
SQSTM1-216ENST00000626660 S4R3C0 116 aa14.75□□□□□ -0.05
SQSTM1-216ENST00000626660 U3KQ87 197 aa14.75□□□□□ -0.05
SQSTM1-216ENST00000626660 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.74□□□□□ -0.05
SQSTM1-216ENST00000626660 SSNA1O43805 119 aa14.74□□□□□ -0.05
SQSTM1-216ENST00000626660 SCGB1D2O95969 90 aa14.74□□□□□ -0.05
SQSTM1-216ENST00000626660 IGHV3-23P01764 117 aa14.74□□□□□ -0.05
SQSTM1-216ENST00000626660 IAPPP10997 89 aa14.74□□□□□ -0.05
SQSTM1-216ENST00000626660 ZP3P21754 424 aa14.74□□□□□ -0.05
SQSTM1-216ENST00000626660 NPY1RP25929 384 aa14.74□□□□□ -0.05
SQSTM1-216ENST00000626660 BSXQ3C1V8 233 aa14.74□□□□□ -0.05
SQSTM1-216ENST00000626660 C2orf83Q53S99 150 aa14.74□□□□□ -0.05
SQSTM1-216ENST00000626660 LINC00482Q8N8I6 264 aa14.74□□□□□ -0.05
SQSTM1-216ENST00000626660 PINX1Q96BK5 328 aaKnown RBP14.74□□□□□ -0.05
SQSTM1-216ENST00000626660 IGHV3-21A0A0B4J1V1 117 aa14.73□□□□□ -0.05
SQSTM1-216ENST00000626660 K7EIM0 57 aa14.73□□□□□ -0.05
SQSTM1-216ENST00000626660 ATP5IP56385 69 aaPredicted RBP14.73□□□□□ -0.05
SQSTM1-216ENST00000626660 ID3Q02535 119 aa14.73□□□□□ -0.05
SQSTM1-216ENST00000626660 CLEC19AQ6UXS0 136 aa14.73□□□□□ -0.05
SQSTM1-216ENST00000626660 ZNF502Q8TBZ5 544 aa14.73□□□□□ -0.05
SQSTM1-216ENST00000626660 C2orf50Q96LR7 162 aa14.73□□□□□ -0.05
SQSTM1-216ENST00000626660 C21orf62Q9NYP8 219 aa14.73□□□□□ -0.05
SQSTM1-216ENST00000626660 TRRAPQ9Y4A5 3859 aa14.73□□□□□ -0.05
SQSTM1-216ENST00000626660 C7orf66A4D0T2 115 aa14.72□□□□□ -0.05
SQSTM1-216ENST00000626660 GOSR2O14653 212 aa14.72□□□□□ -0.05
SQSTM1-216ENST00000626660 MT-CO2P00403 227 aa14.72□□□□□ -0.05
SQSTM1-216ENST00000626660 TRBV12-3P01733 135 aa14.72□□□□□ -0.05
SQSTM1-216ENST00000626660 RPP30P78346 268 aaKnown RBP14.72□□□□□ -0.05
SQSTM1-216ENST00000626660 RPEL1Q2QD12 228 aa14.72□□□□□ -0.05
SQSTM1-216ENST00000626660 PVRIGQ6DKI7 326 aa14.72□□□□□ -0.05
SQSTM1-216ENST00000626660 C11orf87Q6NUJ2 197 aa14.72□□□□□ -0.05
SQSTM1-216ENST00000626660 SCARB1Q8WTV0 552 aa14.72□□□□□ -0.05
SQSTM1-216ENST00000626660 CCDC140Q96MF4 163 aa14.72□□□□□ -0.05
SQSTM1-216ENST00000626660 ATP6V0BQ99437 205 aa14.72□□□□□ -0.05
SQSTM1-216ENST00000626660 RPS10-NUDT3A0A1W2PQS6 291 aa14.71□□□□□ -0.05
SQSTM1-216ENST00000626660 I3L2K1 104 aa14.71□□□□□ -0.05
SQSTM1-216ENST00000626660 HOXD3P31249 432 aaPredicted RBP14.71□□□□□ -0.05
SQSTM1-216ENST00000626660 GPR183P32249 361 aa14.71□□□□□ -0.05
SQSTM1-216ENST00000626660 ARL3P36405 182 aa14.71□□□□□ -0.05
SQSTM1-216ENST00000626660 OPRK1P41145 380 aa14.71□□□□□ -0.05
SQSTM1-216ENST00000626660 SLURP1P55000 103 aa14.71□□□□□ -0.05
SQSTM1-216ENST00000626660 MFAP4P55083 255 aa14.71□□□□□ -0.05
SQSTM1-216ENST00000626660 POLR2GP62487 172 aaKnown RBP eCLIP14.71□□□□□ -0.05
SQSTM1-216ENST00000626660 Q56UQ5 140 aa14.71□□□□□ -0.05
SQSTM1-216ENST00000626660 WFDC9Q8NEX5 89 aa14.71□□□□□ -0.05
SQSTM1-216ENST00000626660 RNASEH2CQ8TDP1 164 aaKnown RBP14.71□□□□□ -0.05
SQSTM1-216ENST00000626660 GAR1Q9NY12 217 aaKnown RBP14.71□□□□□ -0.05
SQSTM1-216ENST00000626660 ALG5Q9Y673 324 aa14.71□□□□□ -0.05
SQSTM1-216ENST00000626660 PKD1L1Q8TDX9 2849 aa14.71□□□□□ -0.05
SQSTM1-216ENST00000626660 BMPR1BO00238 502 aa14.7□□□□□ -0.06
SQSTM1-216ENST00000626660 SSSCA1O60232 199 aa14.7□□□□□ -0.06
SQSTM1-216ENST00000626660 GGCTO75223 188 aaKnown RBP14.7□□□□□ -0.06
SQSTM1-216ENST00000626660 IFNA4P05014 189 aa14.7□□□□□ -0.06
SQSTM1-216ENST00000626660 CLEC3BP05452 202 aa14.7□□□□□ -0.06
SQSTM1-216ENST00000626660 RAB11AP62491 216 aa14.7□□□□□ -0.06
SQSTM1-216ENST00000626660 OXA1LQ15070 435 aa14.7□□□□□ -0.06
SQSTM1-216ENST00000626660 UBAC2Q8NBM4 344 aa14.7□□□□□ -0.06
SQSTM1-216ENST00000626660 TXN2Q99757 166 aa14.7□□□□□ -0.06
SQSTM1-216ENST00000626660 PAIP2BQ9ULR5 123 aaKnown RBP14.7□□□□□ -0.06
SQSTM1-216ENST00000626660 PPP5D1E7EU14 171 aa14.69□□□□□ -0.06
SQSTM1-216ENST00000626660 MBPP02686 304 aaPredicted RBP14.69□□□□□ -0.06
SQSTM1-216ENST00000626660 NPBWR1P48145 328 aa14.69□□□□□ -0.06
SQSTM1-216ENST00000626660 ETFRF1Q6IPR1 90 aa14.69□□□□□ -0.06
SQSTM1-216ENST00000626660 ACSM6Q6P461 480 aa14.69□□□□□ -0.06
SQSTM1-216ENST00000626660 DCUN1D4Q92564 292 aa14.69□□□□□ -0.06
SQSTM1-216ENST00000626660 BSCL2Q96G97 398 aaPredicted RBP14.69□□□□□ -0.06
SQSTM1-216ENST00000626660 RCC1LQ96I51 464 aaKnown RBP14.69□□□□□ -0.06
SQSTM1-216ENST00000626660 RAB40CQ96S21 281 aa14.69□□□□□ -0.06
SQSTM1-216ENST00000626660 MCRIP2Q9BUT9 160 aaKnown RBP14.69□□□□□ -0.06
SQSTM1-216ENST00000626660 OR2T8A6NH00 312 aa14.68□□□□□ -0.06
SQSTM1-216ENST00000626660 OVOL1O14753 267 aa14.68□□□□□ -0.06
SQSTM1-216ENST00000626660 CYCSP99999 105 aaKnown RBP14.68□□□□□ -0.06
SQSTM1-216ENST00000626660 SPSB3Q6PJ21 355 aa14.68□□□□□ -0.06
SQSTM1-216ENST00000626660 TMEM170AQ8WVE7 144 aa14.68□□□□□ -0.06
SQSTM1-216ENST00000626660 DLX4Q92988 240 aaPredicted RBP14.68□□□□□ -0.06
SQSTM1-216ENST00000626660 PSENENQ9NZ42 101 aa14.68□□□□□ -0.06
SQSTM1-216ENST00000626660 STRAPQ9Y3F4 350 aaKnown RBP14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms