RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 NXT2Q9NPJ8 142 aaKnown RBP7.51□□□□□ -1.21
VCL-206ENST00000623461 PPIAL4AQ9Y536 164 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 C2CD4DB7Z1M9 353 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 MPV17L2Q567V2 206 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 FAM90A2PQ658T7 463 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 C1orf210Q8IVY1 113 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 OR52E5Q8NH55 327 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 BEX4Q9NWD9 120 aaPredicted RBP7.51□□□□□ -1.21
VCL-206ENST00000623461 FAM157AC9JC47 383 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 DNAL4O96015 105 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 MNX1P50219 401 aaPredicted RBP7.51□□□□□ -1.21
VCL-206ENST00000623461 OSR1Q8TAX0 266 aaPredicted RBP7.51□□□□□ -1.21
VCL-206ENST00000623461 C16orf92Q96LL3 132 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 CEP290O15078 2479 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 IGKV1D-43A0A0B4J1Z2 117 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 LINC01565O15544 149 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 IGKCP01834 107 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 IGHV4-34P06331 123 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 DNM1P46Q6ZS02 220 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 APELAP0DMC3 54 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 VKORC1L1Q8N0U8 176 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 ZNF407Q9C0G0 2248 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 LEPP41159 167 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 CLEC2AQ6UVW9 174 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 OR5AN1Q8NGI8 311 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 TMUB1Q9BVT8 246 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 C1QTNF5Q9BXJ0 243 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 FGF11Q92914 225 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 GTSF1LQ9H1H1 148 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 IGHV1-45A0A0A0MS14 117 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 A0A1W2PS18 150 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 TEX45Q8NA69 505 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 ABCA4P78363 2273 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 GTF3C1Q12789 2109 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 HELZP42694 1942 aaKnown RBP7.5□□□□□ -1.21
VCL-206ENST00000623461 IGHV5-10-1A0A0J9YXX1 117 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 C21orf140B9A014 251 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 C19orf54Q5BKX5 351 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 FER1L6-AS1Q8NA97 138 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 EPDR1Q9UM22 224 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 IGKV1D-13A0A0B4J2D9 117 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 C12orf77C9JDV5 145 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 IGKV1-13P0DP09 117 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 TMPRSS3P57727 454 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 SLC25A53Q5H9E4 307 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 KLK15Q9H2R5 256 aa7.5□□□□□ -1.21
VCL-206ENST00000623461 TP53BP1Q12888 1972 aaPredicted RBP7.5□□□□□ -1.21
VCL-206ENST00000623461 EFNB3Q15768 340 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 TMEM170BQ5T4T1 132 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 ZNF784Q8NCA9 323 aaPredicted RBP7.49□□□□□ -1.21
VCL-206ENST00000623461 IFI27L1Q96BM0 104 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 COQ2Q96H96 371 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 ZIC3O60481 467 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 TRIP6Q15654 476 aaKnown RBP7.49□□□□□ -1.21
VCL-206ENST00000623461 Q9H3A6 140 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 IGKV1-9A0A0C4DH69 117 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 KBTBD11-OT1A0A1B0GTJ5 212 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 C9JQL5 133 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 C3AR1Q16581 482 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 GCSAMLQ5JQS6 135 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 WDR82Q6UXN9 313 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 CCL13Q99616 98 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 THADAQ6YHU6 1953 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 DOCK9Q9BZ29 2069 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 SS18L1O75177 396 aaPredicted RBP7.49□□□□□ -1.21
VCL-206ENST00000623461 CACNG7P62955 275 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 SPSB3Q6PJ21 355 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 ZNF826PQ6ZT77 177 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 RPP25Q9BUL9 199 aaKnown RBP7.49□□□□□ -1.21
VCL-206ENST00000623461 CEP250Q9BV73 2442 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 A0A087WV48 116 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 SYS1-DBNDD2H3BUS1 97 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 NDUFA3O95167 84 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 PFN1P07737 140 aaKnown RBP7.49□□□□□ -1.21
VCL-206ENST00000623461 CDKN1BP46527 198 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 TMEM249Q2WGJ8 235 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 TTTY12Q9BZ98 90 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 NMSQ5H8A3 153 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 ZNF441Q8N8Z8 693 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 SRXN1Q9BYN0 137 aa7.49□□□□□ -1.21
VCL-206ENST00000623461 DOCK6Q96HP0 2047 aa7.48□□□□□ -1.21
VCL-206ENST00000623461 LINC01549A6NIU2 74 aa7.48□□□□□ -1.21
VCL-206ENST00000623461 F2RL2O00254 374 aa7.48□□□□□ -1.21
VCL-206ENST00000623461 DENND4CQ5VZ89 1909 aa7.48□□□□□ -1.21
VCL-206ENST00000623461 DOCK10Q96BY6 2186 aa7.48□□□□□ -1.21
VCL-206ENST00000623461 H3BRM9 83 aa7.48□□□□□ -1.21
VCL-206ENST00000623461 CFHR5Q9BXR6 569 aa7.48□□□□□ -1.21
VCL-206ENST00000623461 YLPM1P49750 1951 aaKnown RBP7.48□□□□□ -1.21
VCL-206ENST00000623461 A0A1W2PQF6 199 aa7.48□□□□□ -1.21
VCL-206ENST00000623461 WNT9BO14905 357 aa7.48□□□□□ -1.21
VCL-206ENST00000623461 CD55P08174 381 aa7.48□□□□□ -1.21
VCL-206ENST00000623461 SSBP2P81877 361 aaPredicted RBP7.48□□□□□ -1.21
VCL-206ENST00000623461 KIR3DS1Q14943 382 aa7.48□□□□□ -1.21
VCL-206ENST00000623461 IGKV1D-8A0A087WSZ0 117 aa7.48□□□□□ -1.21
VCL-206ENST00000623461 MUC21A0A0G2JKD1 596 aa7.48□□□□□ -1.21
VCL-206ENST00000623461 MUC21A0A140T8X8 626 aa7.48□□□□□ -1.21
VCL-206ENST00000623461 MUC21Q5SSG8 566 aa7.48□□□□□ -1.21
VCL-206ENST00000623461 REPIN1Q9BWE0 567 aaKnown RBP7.48□□□□□ -1.21
VCL-206ENST00000623461 NYNRINQ9P2P1 1898 aaKnown RBP7.48□□□□□ -1.21
VCL-206ENST00000623461 WNK2Q9Y3S1 2297 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms