RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 SAPCD1Q5SSQ6 148 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 ZNF324BQ6AW86 544 aaPredicted RBP11.72□□□□□ -0.53
CPSF1-212ENST00000616140 ST6GALNAC3Q8NDV1 305 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 HIST1H2BHQ93079 126 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 YPEL2Q96QA6 119 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 HIST1H2BNQ99877 126 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 HIST1H2BMQ99879 126 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 ELOVL5Q9NYP7 299 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 FOXA2Q9Y261 457 aaPredicted RBP11.72□□□□□ -0.53
CPSF1-212ENST00000616140 F11RQ9Y624 299 aaKnown RBP11.72□□□□□ -0.53
CPSF1-212ENST00000616140 AUP1Q9Y679 476 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 CD5P06127 495 aa11.71□□□□□ -0.53
CPSF1-212ENST00000616140 FABP2P12104 132 aa11.71□□□□□ -0.53
CPSF1-212ENST00000616140 GCSAMLQ5JQS6 135 aa11.71□□□□□ -0.53
CPSF1-212ENST00000616140 GGNQ86UU5 652 aa11.71□□□□□ -0.53
CPSF1-212ENST00000616140 ABHD17AQ96GS6 310 aa11.71□□□□□ -0.53
CPSF1-212ENST00000616140 LINC00312Q9Y6C7 94 aa11.71□□□□□ -0.53
CPSF1-212ENST00000616140 THADAQ6YHU6 1953 aa11.71□□□□□ -0.53
CPSF1-212ENST00000616140 IGHV3OR16-10A0A075B7F0 116 aa11.71□□□□□ -0.53
CPSF1-212ENST00000616140 CRXO43186 299 aaPredicted RBP11.71□□□□□ -0.54
CPSF1-212ENST00000616140 GPX1P07203 203 aa11.71□□□□□ -0.54
CPSF1-212ENST00000616140 RAB9AP51151 201 aa11.71□□□□□ -0.54
CPSF1-212ENST00000616140 MEF2CQ06413 473 aaPredicted RBP11.71□□□□□ -0.54
CPSF1-212ENST00000616140 TCF23Q7RTU1 214 aa11.71□□□□□ -0.54
CPSF1-212ENST00000616140 RNASE7Q9H1E1 156 aaKnown RBP11.71□□□□□ -0.54
CPSF1-212ENST00000616140 CHODLQ9H9P2 273 aa11.71□□□□□ -0.54
CPSF1-212ENST00000616140 GBF1Q92538 1859 aa11.71□□□□□ -0.54
CPSF1-212ENST00000616140 RLFQ13129 1914 aa11.71□□□□□ -0.54
CPSF1-212ENST00000616140 PRSS2P07478 247 aa11.7□□□□□ -0.54
CPSF1-212ENST00000616140 PRB3Q04118 309 aaPredicted RBP11.7□□□□□ -0.54
CPSF1-212ENST00000616140 FAM90A1Q86YD7 464 aa11.7□□□□□ -0.54
CPSF1-212ENST00000616140 VSIRQ9H7M9 311 aa11.7□□□□□ -0.54
CPSF1-212ENST00000616140 TRBV20OR9-2A0A075B6H5 130 aa11.7□□□□□ -0.54
CPSF1-212ENST00000616140 A0A1B0GUT8 65 aa11.7□□□□□ -0.54
CPSF1-212ENST00000616140 C7orf71A4D174 169 aa11.7□□□□□ -0.54
CPSF1-212ENST00000616140 STAG3L2P0CL84 134 aa11.7□□□□□ -0.54
CPSF1-212ENST00000616140 WDR83OSQ9Y284 106 aa11.7□□□□□ -0.54
CPSF1-212ENST00000616140 H7C2G1 150 aa11.7□□□□□ -0.54
CPSF1-212ENST00000616140 NTN3O00634 580 aaPredicted RBP11.7□□□□□ -0.54
CPSF1-212ENST00000616140 IGHV3-23P01764 117 aa11.7□□□□□ -0.54
CPSF1-212ENST00000616140 CLPSP04118 112 aa11.7□□□□□ -0.54
CPSF1-212ENST00000616140 DUTP33316 252 aaKnown RBP11.7□□□□□ -0.54
CPSF1-212ENST00000616140 C5orf24Q7Z6I8 188 aa11.7□□□□□ -0.54
CPSF1-212ENST00000616140 C18orf15Q96N68 181 aa11.7□□□□□ -0.54
CPSF1-212ENST00000616140 PARD6GQ9BYG4 376 aaPredicted RBP11.7□□□□□ -0.54
CPSF1-212ENST00000616140 SERF1AO75920 110 aa11.69□□□□□ -0.54
CPSF1-212ENST00000616140 ATP5J2P56134 94 aa11.69□□□□□ -0.54
CPSF1-212ENST00000616140 HIST1H4GQ99525 98 aa11.69□□□□□ -0.54
CPSF1-212ENST00000616140 TMEM238LA0A1B0GVL6 79 aa11.69□□□□□ -0.54
CPSF1-212ENST00000616140 A6NJY4 79 aa11.69□□□□□ -0.54
CPSF1-212ENST00000616140 UPK2O00526 184 aa11.69□□□□□ -0.54
CPSF1-212ENST00000616140 IGKV1D-33P01593 117 aa11.69□□□□□ -0.54
CPSF1-212ENST00000616140 IGKV1-33P01594 117 aa11.69□□□□□ -0.54
CPSF1-212ENST00000616140 FAM106AQ4KMX7 169 aa11.69□□□□□ -0.54
CPSF1-212ENST00000616140 ZNF600Q6ZNG1 722 aa11.69□□□□□ -0.54
CPSF1-212ENST00000616140 TMEM105Q8N8V8 129 aa11.69□□□□□ -0.54
CPSF1-212ENST00000616140 GPR82Q96P67 336 aa11.69□□□□□ -0.54
CPSF1-212ENST00000616140 C21orf62Q9NYP8 219 aa11.69□□□□□ -0.54
CPSF1-212ENST00000616140 SEMA5BQ9P283 1151 aa11.69□□□□□ -0.54
CPSF1-212ENST00000616140 C15orf61A6NNL5 157 aa11.69□□□□□ -0.54
CPSF1-212ENST00000616140 ATXN7O15265 892 aaPredicted RBP11.69□□□□□ -0.54
CPSF1-212ENST00000616140 FAM74A4Q5TZK3 123 aa11.69□□□□□ -0.54
CPSF1-212ENST00000616140 GLRX5Q86SX6 157 aa11.69□□□□□ -0.54
CPSF1-212ENST00000616140 RNASEH2CQ8TDP1 164 aaKnown RBP11.69□□□□□ -0.54
CPSF1-212ENST00000616140 HIGD1CA8MV81 97 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 PSPNO60542 156 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 TAS2R60P59551 318 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 PLP1P60201 277 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 ATP5G2Q06055 141 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 PNRC2Q9NPJ4 139 aaKnown RBP11.68□□□□□ -0.54
CPSF1-212ENST00000616140 COLCA2A8K830 154 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 FAM53AQ6NSI3 398 aaPredicted RBP11.68□□□□□ -0.54
CPSF1-212ENST00000616140 ARL6IP6Q8N6S5 226 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 TEX45Q8NA69 505 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 FAM57AQ8TBR7 257 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 RSPO3Q9BXY4 272 aaPredicted RBP11.68□□□□□ -0.54
CPSF1-212ENST00000616140 RFNGQ9Y644 331 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 MYO18BQ8IUG5 2567 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 IGHV3-66A0A0C4DH42 116 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 HEPN1Q6WQI6 88 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 DDB2Q92466 427 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 REG4Q9BYZ8 158 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 OR9G9P0C7N8 305 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 SELLP14151 372 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 OCC1Q8TAD7 63 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 MBD3L1Q8WWY6 194 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 ST6GALNAC6Q969X2 333 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 ZNF414Q96IQ9 312 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 PRDM13Q9H4Q3 707 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 SPRR3Q9UBC9 169 aa11.68□□□□□ -0.54
CPSF1-212ENST00000616140 SNAI2O43623 268 aa11.67□□□□□ -0.54
CPSF1-212ENST00000616140 IGKV3-20P01619 116 aa11.67□□□□□ -0.54
CPSF1-212ENST00000616140 HIST1H1AQ02539 215 aaPredicted RBP11.67□□□□□ -0.54
CPSF1-212ENST00000616140 FOXF2Q12947 444 aa11.67□□□□□ -0.54
CPSF1-212ENST00000616140 FHL1Q13642 323 aa11.67□□□□□ -0.54
CPSF1-212ENST00000616140 DNLZQ5SXM8 178 aa11.67□□□□□ -0.54
CPSF1-212ENST00000616140 TMEM170AQ8WVE7 144 aa11.67□□□□□ -0.54
CPSF1-212ENST00000616140 FBXL7Q9UJT9 491 aa11.67□□□□□ -0.54
CPSF1-212ENST00000616140 CUL9Q8IWT3 2517 aa11.67□□□□□ -0.54
CPSF1-212ENST00000616140 WNK1Q9H4A3 2382 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms