RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 A0A1B0GU03 582 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 FAM223BA6NKX1 122 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 H3BP45 60 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 CCSO14618 274 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 CCNKO75909 580 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 IAPPP10997 89 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 MAS1LP35410 378 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 LPCAT3Q6P1A2 487 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 ZNF429Q86V71 674 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 FAM223AQ8IWN6 122 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 OR4A5Q8NH83 315 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 RBPMSQ93062 196 aaKnown RBP4.28□□□□□ -1.72
CPNE3-208ENST00000614678 SLC2A8Q9NY64 477 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 C14orf166Q9Y224 244 aaKnown RBP4.28□□□□□ -1.72
CPNE3-208ENST00000614678 TRAV6A0A075B6T7 132 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 H3BUA1 57 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 YIF1AO95070 293 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 SLC6A1P30531 599 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 TFPI2P48307 235 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 DEFB1P60022 68 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 CD69Q07108 199 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 DEFB114Q30KQ6 69 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 Q56UQ5 140 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 NMSQ5H8A3 153 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 SPANXN2Q5MJ10 180 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 PLET1Q6UQ28 207 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 GBGT1Q8N5D6 347 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 RNASE11Q8TAA1 199 aaKnown RBP4.28□□□□□ -1.72
CPNE3-208ENST00000614678 ELOVL1Q9BW60 279 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 TBC1D24Q9ULP9 559 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 TGOLN2O43493 480 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 FAM24BQ8N5W8 94 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 ZFAND1Q8TCF1 268 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 RNF2Q99496 336 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 PRRT1Q99946 306 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 SEC22CQ9BRL7 303 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 C21orf62Q9NYP8 219 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 PRNDQ9UKY0 176 aa4.28□□□□□ -1.72
CPNE3-208ENST00000614678 LOC105371267A0A1B0GV96 52 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 ZNF701M0R085 212 aaPredicted RBP4.27□□□□□ -1.73
CPNE3-208ENST00000614678 GGCTO75223 188 aaKnown RBP4.27□□□□□ -1.73
CPNE3-208ENST00000614678 TMEM50AO95807 157 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 TBPP20226 339 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 ZP3P21754 424 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 HOXA1P49639 335 aaPredicted RBP4.27□□□□□ -1.73
CPNE3-208ENST00000614678 MRPS10P82664 201 aaKnown RBP4.27□□□□□ -1.73
CPNE3-208ENST00000614678 GUCA2BQ16661 112 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 OR5B3Q8NH48 314 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 EEF1AKMT3Q96AZ1 226 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 TMEM68Q96MH6 324 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 TMEM56Q96MV1 263 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 NEURL2Q9BR09 285 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 TMEM56-RWDD3S4R434 201 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 SACSQ9NZJ4 4579 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 DUS4LO95620 317 aaKnown RBP4.27□□□□□ -1.73
CPNE3-208ENST00000614678 TMEM182Q6ZP80 229 aaPredicted RBP4.27□□□□□ -1.73
CPNE3-208ENST00000614678 RBKSQ9H477 322 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 SCP2D1Q9UJQ7 156 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 KMT2AQ03164 3969 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 FRAS1Q86XX4 4008 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 BRI3O95415 125 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 APRG1Q8IVJ8 170 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 SGPP2Q8IWX5 399 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 OR1P1Q8NH06 330 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 RRNAD1Q96FB5 475 aaKnown RBP4.27□□□□□ -1.73
CPNE3-208ENST00000614678 OR10C1Q96KK4 312 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 C19orf73Q9NVV2 129 aa4.27□□□□□ -1.73
CPNE3-208ENST00000614678 IGKV1OR2-108A0A075B7D4 117 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 RBMY1BA6NDE4 496 aaKnown RBP4.26□□□□□ -1.73
CPNE3-208ENST00000614678 RBMY1EA6NEQ0 496 aaKnown RBP4.26□□□□□ -1.73
CPNE3-208ENST00000614678 CREBL2O60519 120 aaPredicted RBP4.26□□□□□ -1.73
CPNE3-208ENST00000614678 RBMY1DP0C7P1 496 aaKnown RBP4.26□□□□□ -1.73
CPNE3-208ENST00000614678 GATA2P23769 480 aaPredicted RBP4.26□□□□□ -1.73
CPNE3-208ENST00000614678 KLK9Q2XQG4 91 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 TIGITQ495A1 244 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 GALNT14Q96FL9 552 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 MCRIP2Q9BUT9 160 aaKnown RBP4.26□□□□□ -1.73
CPNE3-208ENST00000614678 KLK9Q9UKQ9 250 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 IGKV1-17P01599 117 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 OPRK1P41145 380 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 CD81P60033 236 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 SSBP1Q04837 148 aaKnown RBP4.26□□□□□ -1.73
CPNE3-208ENST00000614678 DHRS2Q13268 280 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 STPG3Q8N7X2 389 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 CCDC71LQ8N9Z2 235 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 PUS1Q9Y606 427 aaKnown RBP eCLIP4.26□□□□□ -1.73
CPNE3-208ENST00000614678 SMAD5-AS1Q9Y6J3 95 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 C9orf170A2RU37 121 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 CEBPZOSA8MTT3 80 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 SNRPCP09234 159 aaKnown RBP4.26□□□□□ -1.73
CPNE3-208ENST00000614678 DHODHQ02127 395 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 ZNF90Q03938 601 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 CD300CQ08708 224 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 BSXQ3C1V8 233 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 GGNBP1Q5YKI7 109 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 PRSS54Q6PEW0 395 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 TOMM20LQ6UXN7 152 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 WFDC3Q8IUB2 231 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 B9D2Q9BPU9 175 aa4.26□□□□□ -1.73
CPNE3-208ENST00000614678 PAIP2BQ9ULR5 123 aaKnown RBP4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms