RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 GNG5P63218 68 aa10.4□□□□□ -0.74
LIG1-221ENST00000613670 PEAR1Q5VY43 1037 aaPredicted RBP10.4□□□□□ -0.74
LIG1-221ENST00000613670 WDR31Q8NA23 367 aa10.4□□□□□ -0.74
LIG1-221ENST00000613670 A0A1W2PRD5 423 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 A0A1W2PRF3 423 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 A0A1W2PRM7 423 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 RBP4P02753 201 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 LYZP61626 148 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 UNQ5815/PRO19632Q6UWF5 114 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 C9orf106Q8NAJ2 232 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 C5orf30Q96GV9 206 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 ZNRD1Q9P1U0 126 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 IGHV2OR16-5A0A0B4J2B6 119 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 C3orf79P0CE67 100 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 LGALS4P56470 323 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 PMCHL1Q16048 86 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 PCNX2A6NKB5 2137 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 TNXAQ16473 311 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 CENPVQ7Z7K6 275 aaPredicted RBP10.39□□□□□ -0.75
LIG1-221ENST00000613670 GNB1LQ9BYB4 327 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 LNP1A1A4G5 178 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 ISLRO14498 428 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 TMEM144Q7Z5S9 345 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 PMCHL2Q9BQD1 86 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 CLEC5AQ9NY25 188 aa10.39□□□□□ -0.75
LIG1-221ENST00000613670 PMS2P5A8MQ11 134 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 SLC25A17O43808 307 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 YPEL1O60688 119 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 VMA21Q3ZAQ7 101 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 ZADH2Q8N4Q0 377 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 YPEL2Q96QA6 119 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 NEU1Q99519 415 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 CDC42EP3Q9UKI2 254 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 K7EN84 100 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 ACP1P24666 158 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 TCF24Q7RTU0 167 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 C1orf174Q8IYL3 243 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 FDCSPQ8NFU4 85 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 PRSS3P2Q8NHM4 247 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 TMSB15BA0A087X1C1 80 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 HIGD1CA8MV81 97 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 SNAI2O43623 268 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 PDLIM4P50479 330 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 YPEL3P61236 119 aaPredicted RBP10.38□□□□□ -0.75
LIG1-221ENST00000613670 C10orf55Q5SWW7 151 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 C19orf35Q6ZS72 473 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 ZCCHC24Q8N2G6 241 aaKnown RBP10.38□□□□□ -0.75
LIG1-221ENST00000613670 IFI27L2Q9H2X8 130 aa10.38□□□□□ -0.75
LIG1-221ENST00000613670 FA2HQ7L5A8 372 aa10.37□□□□□ -0.75
LIG1-221ENST00000613670 TMEM191AQ9H0A3 160 aa10.37□□□□□ -0.75
LIG1-221ENST00000613670 GAL3ST2Q9H3Q3 398 aa10.37□□□□□ -0.75
LIG1-221ENST00000613670 OSTCQ9NRP0 149 aa10.37□□□□□ -0.75
LIG1-221ENST00000613670 IGKV1D-17A0A075B6S4 117 aa10.37□□□□□ -0.75
LIG1-221ENST00000613670 TRAV9-1A0A075B6T8 112 aa10.37□□□□□ -0.75
LIG1-221ENST00000613670 LEPROTL1O95214 131 aa10.37□□□□□ -0.75
LIG1-221ENST00000613670 PRB3Q04118 309 aaPredicted RBP10.37□□□□□ -0.75
LIG1-221ENST00000613670 TMEM177Q53S58 311 aa10.37□□□□□ -0.75
LIG1-221ENST00000613670 LEMD1Q68G75 181 aa10.37□□□□□ -0.75
LIG1-221ENST00000613670 Q6ZVH6 145 aa10.37□□□□□ -0.75
LIG1-221ENST00000613670 GCSAMQ8N6F7 178 aa10.37□□□□□ -0.75
LIG1-221ENST00000613670 RCHY1Q96PM5 261 aa10.37□□□□□ -0.75
LIG1-221ENST00000613670 C20orf144Q9BQM9 153 aa10.37□□□□□ -0.75
LIG1-221ENST00000613670 IDI2-AS1Q9NZ38 188 aa10.37□□□□□ -0.75
LIG1-221ENST00000613670 SELENOKQ9Y6D0 94 aa10.37□□□□□ -0.75
LIG1-221ENST00000613670 ZNF134P52741 427 aa10.37□□□□□ -0.75
LIG1-221ENST00000613670 SFXN3Q9BWM7 321 aa10.37□□□□□ -0.75
LIG1-221ENST00000613670 KBTBD11-OT1A0A1B0GTJ5 212 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 M0QZ24 198 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 NDUFB3O43676 98 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 SAA1P0DJI8 122 aaPredicted RBP10.36□□□□□ -0.75
LIG1-221ENST00000613670 CX3CL1P78423 397 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 TBR1Q16650 682 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 FAM162BQ5T6X4 162 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 PRNTQ86SH4 94 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 OR8B3Q8NGG8 313 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 A0A1W2PS18 150 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 DLL1O00548 723 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 CT45A10P0DMU9 189 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 TMEM11P17152 192 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 BTF3P20290 206 aaKnown RBP10.36□□□□□ -0.75
LIG1-221ENST00000613670 VDAC2P45880 294 aaPredicted RBP10.36□□□□□ -0.75
LIG1-221ENST00000613670 TPTE2P1Q5T6R2 138 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 LINC00305Q7Z4B0 112 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 GSX1Q9H4S2 264 aaPredicted RBP10.36□□□□□ -0.75
LIG1-221ENST00000613670 ZNF430Q9H8G1 570 aaPredicted RBP10.36□□□□□ -0.75
LIG1-221ENST00000613670 TNFRSF19Q9NS68 423 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 SLC25A10Q9UBX3 287 aaPredicted RBP10.36□□□□□ -0.75
LIG1-221ENST00000613670 IZUMO1RA6ND01 250 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 A8MWL6 223 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 PRR33A8MZF0 331 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 C9JCJ5 164 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 PEX7O00628 323 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 IGKV1-16P04430 117 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 HES1Q14469 280 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 ASCL3Q9NQ33 180 aa10.36□□□□□ -0.75
LIG1-221ENST00000613670 PLXNB1O43157 2135 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 KIR2DL5BA0A0G2JN68 375 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 KIR2DL5BA0A0G2JPC4 375 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 AREGP15514 252 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 CCL3L1P16619 93 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms