RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 CACFD1Q9UGQ2 172 aa9.93□□□□□ -0.82
UPF1-208ENST00000600012 IGHV7-81A0A0B4J1V7 117 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 A0A1W2PN81 502 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 C15orf62A8K5M9 175 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 TEX22C9J3V5 150 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 K7EIL1 84 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 CST7O76096 145 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 HLA-DRB1P01911 266 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 AMY1AP04745 511 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 REG1AP05451 166 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 METTL15P1P0C7V9 234 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 CHRNA7P36544 502 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 CX3CL1P78423 397 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 NHLH2Q02577 135 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 WT1-ASQ06250 92 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 ZNF345Q14585 488 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 FXYD3Q14802 87 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 TMEM14EPQ6UXP3 125 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 CENPVQ7Z7K6 275 aaPredicted RBP9.92□□□□□ -0.82
UPF1-208ENST00000600012 ABHD5Q8WTS1 349 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 RCC1LQ96I51 464 aaKnown RBP9.92□□□□□ -0.82
UPF1-208ENST00000600012 FAM103A1Q9BTL3 118 aaKnown RBP9.92□□□□□ -0.82
UPF1-208ENST00000600012 SMIM3Q9BZL3 60 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 SLC25A31Q9H0C2 315 aa9.92□□□□□ -0.82
UPF1-208ENST00000600012 STRAPQ9Y3F4 350 aaKnown RBP9.92□□□□□ -0.82
UPF1-208ENST00000600012 TSSC4Q9Y5U2 329 aaPredicted RBP9.92□□□□□ -0.82
UPF1-208ENST00000600012 A0A0D9SG52 128 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 TCRBV4S1A1TA0A5B7 111 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 IGLC7A0M8Q6 106 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 FGF16O43320 207 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 IFNA10P01566 189 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 AREGP15514 252 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 NPY1RP25929 384 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 S100A11P31949 105 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 OPCMLQ14982 345 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 TCTEX1D4Q5JR98 221 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 C19orf35Q6ZS72 473 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 HAPLN4Q86UW8 402 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 SLC24A4Q8NFF2 622 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 OR4X2Q8NGF9 303 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 TMEM170AQ8WVE7 144 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 ARPC1AQ92747 370 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 PARP11Q9NR21 331 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 FBXL17Q9UF56 701 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 FBXO7Q9Y3I1 522 aa9.91□□□□□ -0.82
UPF1-208ENST00000600012 OR13C7P0DN81 318 aa9.9□□□□□ -0.82
UPF1-208ENST00000600012 RNASE2P10153 161 aaKnown RBP9.9□□□□□ -0.82
UPF1-208ENST00000600012 SULT1A1P50225 295 aa9.9□□□□□ -0.82
UPF1-208ENST00000600012 ARL16Q0P5N6 197 aa9.9□□□□□ -0.82
UPF1-208ENST00000600012 C9orf152Q5JTZ5 239 aa9.9□□□□□ -0.82
UPF1-208ENST00000600012 OR8G2PQ6IF36 304 aa9.9□□□□□ -0.82
UPF1-208ENST00000600012 ZNF562Q6V9R5 426 aa9.9□□□□□ -0.82
UPF1-208ENST00000600012 STX12Q86Y82 276 aa9.9□□□□□ -0.82
UPF1-208ENST00000600012 TMEM217Q8N7C4 229 aa9.9□□□□□ -0.82
UPF1-208ENST00000600012 NBEAL2Q6ZNJ1 2754 aa9.9□□□□□ -0.83
UPF1-208ENST00000600012 KANTRA0A1W2PQU2 76 aa9.89□□□□□ -0.83
UPF1-208ENST00000600012 LINC01548A6NM66 108 aa9.89□□□□□ -0.83
UPF1-208ENST00000600012 PMS2P5A8MQ11 134 aa9.89□□□□□ -0.83
UPF1-208ENST00000600012 INS-IGF2F8WCM5 200 aa9.89□□□□□ -0.83
UPF1-208ENST00000600012 BCL2L11O43521 198 aa9.89□□□□□ -0.83
UPF1-208ENST00000600012 LY86O95711 162 aa9.89□□□□□ -0.83
UPF1-208ENST00000600012 OR8U8P0C7N1 319 aa9.89□□□□□ -0.83
UPF1-208ENST00000600012 RPP30P78346 268 aaKnown RBP9.89□□□□□ -0.83
UPF1-208ENST00000600012 ERHP84090 104 aaKnown RBP9.89□□□□□ -0.83
UPF1-208ENST00000600012 KHDC1LQ5JSQ8 128 aa9.89□□□□□ -0.83
UPF1-208ENST00000600012 ASPHD1Q5U4P2 390 aa9.89□□□□□ -0.83
UPF1-208ENST00000600012 OR5C1Q8NGR4 320 aa9.89□□□□□ -0.83
UPF1-208ENST00000600012 GPR61Q9BZJ8 451 aa9.89□□□□□ -0.83
UPF1-208ENST00000600012 WFDC1Q9HC57 220 aa9.89□□□□□ -0.83
UPF1-208ENST00000600012 U3KQ87 197 aa9.89□□□□□ -0.83
UPF1-208ENST00000600012 M0QZK8 103 aa9.88□□□□□ -0.83
UPF1-208ENST00000600012 ATP6V0E1O15342 81 aa9.88□□□□□ -0.83
UPF1-208ENST00000600012 EGR2P11161 476 aaPredicted RBP9.88□□□□□ -0.83
UPF1-208ENST00000600012 SNCAP37840 140 aa9.88□□□□□ -0.83
UPF1-208ENST00000600012 HTR2BP41595 481 aa9.88□□□□□ -0.83
UPF1-208ENST00000600012 BAXQ07812 192 aa9.88□□□□□ -0.83
UPF1-208ENST00000600012 SLC38A11Q08AI6 406 aa9.88□□□□□ -0.83
UPF1-208ENST00000600012 CLINT1Q14677 625 aa9.88□□□□□ -0.83
UPF1-208ENST00000600012 ECSCRQ19T08 205 aa9.88□□□□□ -0.83
UPF1-208ENST00000600012 BSXQ3C1V8 233 aa9.88□□□□□ -0.83
UPF1-208ENST00000600012 C2orf83Q53S99 150 aa9.88□□□□□ -0.83
UPF1-208ENST00000600012 DEFB121Q5J5C9 76 aa9.88□□□□□ -0.83
UPF1-208ENST00000600012 ETV3LQ6ZN32 361 aa9.88□□□□□ -0.83
UPF1-208ENST00000600012 MRPL41Q8IXM3 137 aaKnown RBP9.88□□□□□ -0.83
UPF1-208ENST00000600012 OR1S2Q8NGQ3 325 aa9.88□□□□□ -0.83
UPF1-208ENST00000600012 DPF1Q92782 380 aa9.88□□□□□ -0.83
UPF1-208ENST00000600012 P2RX4Q99571 388 aa9.88□□□□□ -0.83
UPF1-208ENST00000600012 ARPC5LQ9BPX5 153 aa9.88□□□□□ -0.83
UPF1-208ENST00000600012 WI2-2373I1.2A0A1W2PRP0 233 aa9.87□□□□□ -0.83
UPF1-208ENST00000600012 IFNA4P05014 189 aa9.87□□□□□ -0.83
UPF1-208ENST00000600012 RAB11AP62491 216 aa9.87□□□□□ -0.83
UPF1-208ENST00000600012 EGFEM1PQ0D2K5 195 aa9.87□□□□□ -0.83
UPF1-208ENST00000600012 RPL7L1Q6DKI1 246 aaKnown RBP9.87□□□□□ -0.83
UPF1-208ENST00000600012 HSD17B13Q7Z5P4 300 aaPredicted RBP9.87□□□□□ -0.83
UPF1-208ENST00000600012 STPG2Q8N412 459 aa9.87□□□□□ -0.83
UPF1-208ENST00000600012 LILRB2Q8N423 598 aa9.87□□□□□ -0.83
UPF1-208ENST00000600012 LFNGQ8NES3 379 aa9.87□□□□□ -0.83
UPF1-208ENST00000600012 SRSF8Q9BRL6 282 aaKnown RBP9.87□□□□□ -0.83
UPF1-208ENST00000600012 ZNF471Q9BX82 626 aaPredicted RBP9.87□□□□□ -0.83
UPF1-208ENST00000600012 CYTL1Q9NRR1 136 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms