RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 TPT1P13693 172 aaKnown RBP12.02□□□□□ -0.49
TRIM28-209ENST00000597423 UBA52P62987 128 aaKnown RBP12.02□□□□□ -0.49
TRIM28-209ENST00000597423 NDPQ00604 133 aa12.02□□□□□ -0.49
TRIM28-209ENST00000597423 ECSCRQ19T08 205 aa12.02□□□□□ -0.49
TRIM28-209ENST00000597423 PVRIGQ6DKI7 326 aa12.02□□□□□ -0.49
TRIM28-209ENST00000597423 Q71RC1 249 aaPredicted RBP12.02□□□□□ -0.49
TRIM28-209ENST00000597423 FAM110DQ8TAY7 271 aaPredicted RBP12.02□□□□□ -0.49
TRIM28-209ENST00000597423 MISP3Q96FF7 219 aa12.02□□□□□ -0.49
TRIM28-209ENST00000597423 HIVEP2P31629 2446 aa12.02□□□□□ -0.49
TRIM28-209ENST00000597423 CRLF1O75462 422 aa12.01□□□□□ -0.49
TRIM28-209ENST00000597423 OPRK1P41145 380 aa12.01□□□□□ -0.49
TRIM28-209ENST00000597423 HILS1P60008 231 aa12.01□□□□□ -0.49
TRIM28-209ENST00000597423 ARL16Q0P5N6 197 aa12.01□□□□□ -0.49
TRIM28-209ENST00000597423 RAB31Q13636 194 aa12.01□□□□□ -0.49
TRIM28-209ENST00000597423 UBAC2Q8NBM4 344 aa12.01□□□□□ -0.49
TRIM28-209ENST00000597423 SLC35E1Q96K37 410 aa12.01□□□□□ -0.49
TRIM28-209ENST00000597423 NPVFQ9HCQ7 196 aa12.01□□□□□ -0.49
TRIM28-209ENST00000597423 ZNF355PQ9NSJ1 428 aa12.01□□□□□ -0.49
TRIM28-209ENST00000597423 LINC01548A6NM66 108 aa12□□□□□ -0.49
TRIM28-209ENST00000597423 MPDU1O75352 247 aa12□□□□□ -0.49
TRIM28-209ENST00000597423 RNASE1P07998 156 aaKnown RBP12□□□□□ -0.49
TRIM28-209ENST00000597423 CD69Q07108 199 aa12□□□□□ -0.49
TRIM28-209ENST00000597423 ASPHD1Q5U4P2 390 aa12□□□□□ -0.49
TRIM28-209ENST00000597423 RPL7L1Q6DKI1 246 aaKnown RBP12□□□□□ -0.49
TRIM28-209ENST00000597423 HAPLN4Q86UW8 402 aa12□□□□□ -0.49
TRIM28-209ENST00000597423 BAP18Q8IXM2 172 aa12□□□□□ -0.49
TRIM28-209ENST00000597423 STOML3Q8TAV4 291 aa12□□□□□ -0.49
TRIM28-209ENST00000597423 TMEM170AQ8WVE7 144 aa12□□□□□ -0.49
TRIM28-209ENST00000597423 GNPNAT1Q96EK6 184 aaPredicted RBP12□□□□□ -0.49
TRIM28-209ENST00000597423 BSCL2Q96G97 398 aaPredicted RBP12□□□□□ -0.49
TRIM28-209ENST00000597423 DUX5Q96PT3 197 aa12□□□□□ -0.49
TRIM28-209ENST00000597423 PARD6GQ9BYG4 376 aaPredicted RBP12□□□□□ -0.49
TRIM28-209ENST00000597423 SLA2Q9H6Q3 261 aa12□□□□□ -0.49
TRIM28-209ENST00000597423 CYTL1Q9NRR1 136 aa12□□□□□ -0.49
TRIM28-209ENST00000597423 FBXO7Q9Y3I1 522 aa12□□□□□ -0.49
TRIM28-209ENST00000597423 TNCP24821 2201 aa12□□□□□ -0.49
TRIM28-209ENST00000597423 TLN2Q9Y4G6 2542 aa11.99□□□□□ -0.49
TRIM28-209ENST00000597423 SMCO3A2RU48 225 aa11.99□□□□□ -0.49
TRIM28-209ENST00000597423 H3BUA1 57 aa11.99□□□□□ -0.49
TRIM28-209ENST00000597423 BRI3O95415 125 aa11.99□□□□□ -0.49
TRIM28-209ENST00000597423 SLC35B1P78383 322 aa11.99□□□□□ -0.49
TRIM28-209ENST00000597423 VWC2Q2TAL6 325 aa11.99□□□□□ -0.49
TRIM28-209ENST00000597423 ZNF709Q8N972 641 aa11.99□□□□□ -0.49
TRIM28-209ENST00000597423 WFDC1Q9HC57 220 aa11.99□□□□□ -0.49
TRIM28-209ENST00000597423 FAM181BA6NEQ2 426 aa11.98□□□□□ -0.49
TRIM28-209ENST00000597423 PRSS46E5RG02 174 aa11.98□□□□□ -0.49
TRIM28-209ENST00000597423 G3V318 75 aa11.98□□□□□ -0.49
TRIM28-209ENST00000597423 TCF21O43680 179 aa11.98□□□□□ -0.49
TRIM28-209ENST00000597423 SCGB2A1O75556 95 aa11.98□□□□□ -0.49
TRIM28-209ENST00000597423 IFNA7P01567 189 aa11.98□□□□□ -0.49
TRIM28-209ENST00000597423 AKR1C1Q04828 323 aa11.98□□□□□ -0.49
TRIM28-209ENST00000597423 SLC16A13Q7RTY0 426 aa11.98□□□□□ -0.49
TRIM28-209ENST00000597423 Q8N2B8 174 aa11.98□□□□□ -0.49
TRIM28-209ENST00000597423 OR2T6Q8NHC8 308 aa11.98□□□□□ -0.49
TRIM28-209ENST00000597423 ST8SIA2Q92186 375 aa11.98□□□□□ -0.49
TRIM28-209ENST00000597423 PHYHIPLQ96FC7 376 aa11.98□□□□□ -0.49
TRIM28-209ENST00000597423 IGLV11-55A0A075B6I3 123 aa11.97□□□□□ -0.49
TRIM28-209ENST00000597423 TMEM89A2RUT3 159 aa11.97□□□□□ -0.49
TRIM28-209ENST00000597423 C17orf112F2Z3M2 114 aa11.97□□□□□ -0.49
TRIM28-209ENST00000597423 MT-CO2P00403 227 aa11.97□□□□□ -0.49
TRIM28-209ENST00000597423 KLK9Q2XQG4 91 aa11.97□□□□□ -0.49
TRIM28-209ENST00000597423 TEPPQ6URK8 271 aa11.97□□□□□ -0.49
TRIM28-209ENST00000597423 TMEM144Q7Z5S9 345 aa11.97□□□□□ -0.49
TRIM28-209ENST00000597423 NECAP1Q8NC96 275 aa11.97□□□□□ -0.49
TRIM28-209ENST00000597423 CXorf58Q96LI9 332 aa11.97□□□□□ -0.49
TRIM28-209ENST00000597423 GINS3Q9BRX5 216 aa11.97□□□□□ -0.49
TRIM28-209ENST00000597423 ARV1Q9H2C2 271 aa11.97□□□□□ -0.49
TRIM28-209ENST00000597423 ZNF702PQ9H963 129 aa11.97□□□□□ -0.49
TRIM28-209ENST00000597423 GAR1Q9NY12 217 aaKnown RBP11.97□□□□□ -0.49
TRIM28-209ENST00000597423 FBXL7Q9UJT9 491 aa11.97□□□□□ -0.49
TRIM28-209ENST00000597423 KLK9Q9UKQ9 250 aa11.97□□□□□ -0.49
TRIM28-209ENST00000597423 UBE2L5PA0A1B0GUS4 154 aa11.96□□□□□ -0.49
TRIM28-209ENST00000597423 SOX15O60248 233 aa11.96□□□□□ -0.49
TRIM28-209ENST00000597423 FGF7P21781 194 aa11.96□□□□□ -0.49
TRIM28-209ENST00000597423 NPBWR1P48145 328 aa11.96□□□□□ -0.49
TRIM28-209ENST00000597423 MFAP2P55001 183 aa11.96□□□□□ -0.49
TRIM28-209ENST00000597423 MFAP4P55083 255 aa11.96□□□□□ -0.49
TRIM28-209ENST00000597423 GAMTQ14353 236 aa11.96□□□□□ -0.49
TRIM28-209ENST00000597423 C19orf54Q5BKX5 351 aa11.96□□□□□ -0.49
TRIM28-209ENST00000597423 TEX261Q6UWH6 196 aa11.96□□□□□ -0.49
TRIM28-209ENST00000597423 BTNL8Q6UX41 500 aa11.96□□□□□ -0.49
TRIM28-209ENST00000597423 VN1R17PQ8TDU5 208 aa11.96□□□□□ -0.49
TRIM28-209ENST00000597423 TAF15Q92804 592 aaKnown RBP eCLIP11.96□□□□□ -0.49
TRIM28-209ENST00000597423 USMG5Q96IX5 58 aa11.96□□□□□ -0.49
TRIM28-209ENST00000597423 FANCD2OSQ96PS1 177 aa11.96□□□□□ -0.49
TRIM28-209ENST00000597423 WDR61Q9GZS3 305 aaKnown RBP11.96□□□□□ -0.49
TRIM28-209ENST00000597423 ESM1Q9NQ30 184 aa11.96□□□□□ -0.49
TRIM28-209ENST00000597423 KCNIP2Q9NS61 270 aa11.96□□□□□ -0.49
TRIM28-209ENST00000597423 LINC00527Q9UJ94 153 aa11.96□□□□□ -0.49
TRIM28-209ENST00000597423 WDR83OSQ9Y284 106 aa11.96□□□□□ -0.49
TRIM28-209ENST00000597423 TET2Q6N021 2002 aaPredicted RBP11.96□□□□□ -0.5
TRIM28-209ENST00000597423 ZNF469Q96JG9 3925 aaPredicted RBP11.95□□□□□ -0.5
TRIM28-209ENST00000597423 TRAV30A0A087WSZ9 112 aa11.95□□□□□ -0.5
TRIM28-209ENST00000597423 A0A0G2JLM5 398 aa11.95□□□□□ -0.5
TRIM28-209ENST00000597423 FAM223BA6NKX1 122 aa11.95□□□□□ -0.5
TRIM28-209ENST00000597423 I3L2K1 104 aa11.95□□□□□ -0.5
TRIM28-209ENST00000597423 PRH1P02810 166 aa11.95□□□□□ -0.5
TRIM28-209ENST00000597423 FABP1P07148 127 aa11.95□□□□□ -0.5
TRIM28-209ENST00000597423 PPIFP30405 207 aaKnown RBP11.95□□□□□ -0.5
TRIM28-209ENST00000597423 ATP5G2Q06055 141 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms