RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 SLC25A46Q96AG3 418 aa8.57□□□□□ -1.04
CLIP3-204ENST00000590559 ZFAND3Q9H8U3 227 aa8.57□□□□□ -1.04
CLIP3-204ENST00000590559 IGHV3-49A0A0A0MS15 119 aa8.56□□□□□ -1.04
CLIP3-204ENST00000590559 TRAV2A0A0B4J234 112 aa8.56□□□□□ -1.04
CLIP3-204ENST00000590559 INS-IGF2F8WCM5 200 aa8.56□□□□□ -1.04
CLIP3-204ENST00000590559 ATP6V1G2O95670 118 aa8.56□□□□□ -1.04
CLIP3-204ENST00000590559 APOHP02749 345 aaPredicted RBP8.56□□□□□ -1.04
CLIP3-204ENST00000590559 CD5P06127 495 aa8.56□□□□□ -1.04
CLIP3-204ENST00000590559 GIG44P09565 113 aaPredicted RBP8.56□□□□□ -1.04
CLIP3-204ENST00000590559 P0C879 139 aa8.56□□□□□ -1.04
CLIP3-204ENST00000590559 UCP3P55916 312 aa8.56□□□□□ -1.04
CLIP3-204ENST00000590559 HSPE1P61604 102 aaKnown RBP8.56□□□□□ -1.04
CLIP3-204ENST00000590559 TMEM69Q5SWH9 247 aa8.56□□□□□ -1.04
CLIP3-204ENST00000590559 TOMM20LQ6UXN7 152 aa8.56□□□□□ -1.04
CLIP3-204ENST00000590559 TBC1D26Q86UD7 250 aa8.56□□□□□ -1.04
CLIP3-204ENST00000590559 FAM24BQ8N5W8 94 aa8.56□□□□□ -1.04
CLIP3-204ENST00000590559 C11orf45Q8TAV5 145 aa8.56□□□□□ -1.04
CLIP3-204ENST00000590559 ST8SIA2Q92186 375 aa8.56□□□□□ -1.04
CLIP3-204ENST00000590559 MFFQ9GZY8 342 aa8.56□□□□□ -1.04
CLIP3-204ENST00000590559 IGHV3OR16-13A0A075B7E8 117 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 IGHV3-74A0A0B4J1X5 117 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 DFFBO76075 338 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 IGHV3-48P01763 117 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 PRSS3P35030 304 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 TFPI2P48307 235 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 TCTAP57738 103 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 RBMS2Q15434 407 aaKnown RBP8.55□□□□□ -1.04
CLIP3-204ENST00000590559 NEDD8Q15843 81 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 KCTD21Q4G0X4 260 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 PHLDA2Q53GA4 152 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 LPCAT3Q6P1A2 487 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 TCF24Q7RTU0 167 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 GBGT1Q8N5D6 347 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 SAMD12Q8N8I0 201 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 Q8NAQ8 132 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 TSPAN14Q8NG11 270 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 MISP3Q96FF7 219 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 MS4A6AQ9H2W1 248 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 Q9H521 79 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 APLNQ9ULZ1 77 aa8.55□□□□□ -1.04
CLIP3-204ENST00000590559 IGKV3-7A0A075B6H7 116 aa8.54□□□□□ -1.04
CLIP3-204ENST00000590559 YIF1AO95070 293 aa8.54□□□□□ -1.04
CLIP3-204ENST00000590559 CA1P00915 261 aaPredicted RBP8.54□□□□□ -1.04
CLIP3-204ENST00000590559 EIF4EP06730 217 aaKnown RBP8.54□□□□□ -1.04
CLIP3-204ENST00000590559 HLA-DMAP28067 261 aa8.54□□□□□ -1.04
CLIP3-204ENST00000590559 H2BFWTQ7Z2G1 175 aa8.54□□□□□ -1.04
CLIP3-204ENST00000590559 OR4A16Q8NH70 328 aa8.54□□□□□ -1.04
CLIP3-204ENST00000590559 C2CD4CQ8TF44 421 aa8.54□□□□□ -1.04
CLIP3-204ENST00000590559 YIPF6Q96EC8 236 aa8.54□□□□□ -1.04
CLIP3-204ENST00000590559 HRH4Q9H3N8 390 aa8.54□□□□□ -1.04
CLIP3-204ENST00000590559 DNAH11Q96DT5 4516 aa8.53□□□□□ -1.04
CLIP3-204ENST00000590559 A0A0B4J293 547 aa8.53□□□□□ -1.04
CLIP3-204ENST00000590559 A0A1B0GU03 582 aa8.53□□□□□ -1.04
CLIP3-204ENST00000590559 GNG7O60262 68 aa8.53□□□□□ -1.04
CLIP3-204ENST00000590559 TMEM50AO95807 157 aa8.53□□□□□ -1.04
CLIP3-204ENST00000590559 IGKV1-5P01602 117 aa8.53□□□□□ -1.04
CLIP3-204ENST00000590559 RND3P61587 244 aa8.53□□□□□ -1.04
CLIP3-204ENST00000590559 PAFAH1B2P68402 229 aa8.53□□□□□ -1.04
CLIP3-204ENST00000590559 TMEM187Q14656 261 aa8.53□□□□□ -1.04
CLIP3-204ENST00000590559 IZUMO4Q1ZYL8 232 aa8.53□□□□□ -1.04
CLIP3-204ENST00000590559 ZNF600Q6ZNG1 722 aa8.53□□□□□ -1.04
CLIP3-204ENST00000590559 TRPT1Q86TN4 253 aaKnown RBP8.53□□□□□ -1.04
CLIP3-204ENST00000590559 MRGPRFQ96AM1 343 aa8.53□□□□□ -1.04
CLIP3-204ENST00000590559 CMTM3Q96MX0 182 aa8.53□□□□□ -1.04
CLIP3-204ENST00000590559 GINS3Q9BRX5 216 aa8.53□□□□□ -1.04
CLIP3-204ENST00000590559 SCPEP1Q9HB40 452 aa8.53□□□□□ -1.04
CLIP3-204ENST00000590559 PUS1Q9Y606 427 aaKnown RBP eCLIP8.53□□□□□ -1.04
CLIP3-204ENST00000590559 ZNF705EA8MWA4 302 aaPredicted RBP8.52□□□□□ -1.05
CLIP3-204ENST00000590559 DEFB4AO15263 64 aa8.52□□□□□ -1.05
CLIP3-204ENST00000590559 ST8SIA3O43173 380 aa8.52□□□□□ -1.05
CLIP3-204ENST00000590559 IFNA4P05014 189 aa8.52□□□□□ -1.05
CLIP3-204ENST00000590559 RBMY1A1P0DJD3 496 aaKnown RBP8.52□□□□□ -1.05
CLIP3-204ENST00000590559 RBMY1CP0DJD4 496 aa8.52□□□□□ -1.05
CLIP3-204ENST00000590559 CRYBB3P26998 211 aa8.52□□□□□ -1.05
CLIP3-204ENST00000590559 NPBWR1P48145 328 aa8.52□□□□□ -1.05
CLIP3-204ENST00000590559 DEFB131AP59861 70 aa8.52□□□□□ -1.05
CLIP3-204ENST00000590559 ERHP84090 104 aaKnown RBP8.52□□□□□ -1.05
CLIP3-204ENST00000590559 RBMY1FQ15415 496 aaKnown RBP8.52□□□□□ -1.05
CLIP3-204ENST00000590559 BSXQ3C1V8 233 aa8.52□□□□□ -1.05
CLIP3-204ENST00000590559 LEMD1Q68G75 181 aa8.52□□□□□ -1.05
CLIP3-204ENST00000590559 LHFPL1Q86WI0 220 aa8.52□□□□□ -1.05
CLIP3-204ENST00000590559 DUSP18Q8NEJ0 188 aa8.52□□□□□ -1.05
CLIP3-204ENST00000590559 PINX1Q96BK5 328 aaKnown RBP8.52□□□□□ -1.05
CLIP3-204ENST00000590559 FNDC4Q9H6D8 234 aaPredicted RBP8.52□□□□□ -1.05
CLIP3-204ENST00000590559 MRPL36Q9P0J6 103 aaKnown RBP8.52□□□□□ -1.05
CLIP3-204ENST00000590559 FBXL17Q9UF56 701 aa8.52□□□□□ -1.05
CLIP3-204ENST00000590559 C11orf94C9JXX5 98 aa8.51□□□□□ -1.05
CLIP3-204ENST00000590559 K7EQG2 157 aa8.51□□□□□ -1.05
CLIP3-204ENST00000590559 APOA1P02647 267 aa8.51□□□□□ -1.05
CLIP3-204ENST00000590559 RNASE2P10153 161 aaKnown RBP8.51□□□□□ -1.05
CLIP3-204ENST00000590559 S100GP29377 79 aa8.51□□□□□ -1.05
CLIP3-204ENST00000590559 RCVRNP35243 200 aa8.51□□□□□ -1.05
CLIP3-204ENST00000590559 TSPAN5P62079 268 aa8.51□□□□□ -1.05
CLIP3-204ENST00000590559 CSNK1G2-AS1Q8NCQ2 148 aa8.51□□□□□ -1.05
CLIP3-204ENST00000590559 DCANP1Q8TF63 244 aa8.51□□□□□ -1.05
CLIP3-204ENST00000590559 ZNF486Q96H40 463 aaPredicted RBP8.51□□□□□ -1.05
CLIP3-204ENST00000590559 GRAMD2BQ96HH9 432 aa8.51□□□□□ -1.05
CLIP3-204ENST00000590559 X6R8D5 127 aa8.51□□□□□ -1.05
CLIP3-204ENST00000590559 IGHV3-66A0A0C4DH42 116 aa8.5□□□□□ -1.05
CLIP3-204ENST00000590559 DNASE2O00115 360 aaPredicted RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms