RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 RNF223E7ERA6 249 aa15.79■□□□□ 0.12
TRIM47-204ENST00000587339 IGHV4-38-2P0DP08 117 aa15.79■□□□□ 0.12
TRIM47-204ENST00000587339 M6PRP20645 277 aa15.79■□□□□ 0.12
TRIM47-204ENST00000587339 CCL20P78556 96 aa15.79■□□□□ 0.12
TRIM47-204ENST00000587339 LOXL1Q08397 574 aaPredicted RBP15.79■□□□□ 0.12
TRIM47-204ENST00000587339 EIF5A2Q9GZV4 153 aaKnown RBP15.79■□□□□ 0.12
TRIM47-204ENST00000587339 TRAV1-1A0A0B4J248 108 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 CD5P06127 495 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 ACOT6Q3I5F7 207 aaPredicted RBP15.78■□□□□ 0.12
TRIM47-204ENST00000587339 LCN15Q6UWW0 184 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 ZNF562Q6V9R5 426 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 OR1P1Q8NH06 330 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 ABHD5Q8WTS1 349 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 MBD3L1Q8WWY6 194 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 SLC35E1Q96K37 410 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 PBDC1Q9BVG4 233 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 PXMP4Q9Y6I8 212 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 NAV2Q8IVL1 2488 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 TMEM218A2RU14 115 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 GUK1Q16774 197 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 MIC13Q5XKP0 118 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 SSX7Q7RTT5 188 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 MAPK1IP1LQ8NDC0 245 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 MBD6Q96DN6 1003 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 FNDC4Q9H6D8 234 aaPredicted RBP15.78■□□□□ 0.12
TRIM47-204ENST00000587339 SLC39A9Q9NUM3 307 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 F11RQ9Y624 299 aaKnown RBP15.78■□□□□ 0.12
TRIM47-204ENST00000587339 NAV3Q8IVL0 2385 aa15.78■□□□□ 0.12
TRIM47-204ENST00000587339 PVRIGQ6DKI7 326 aa15.77■□□□□ 0.12
TRIM47-204ENST00000587339 OR2T6Q8NHC8 308 aa15.77■□□□□ 0.12
TRIM47-204ENST00000587339 MISP3Q96FF7 219 aa15.77■□□□□ 0.12
TRIM47-204ENST00000587339 ACY3Q96HD9 319 aa15.77■□□□□ 0.12
TRIM47-204ENST00000587339 HELZ2Q9BYK8 2649 aaKnown RBP15.77■□□□□ 0.12
TRIM47-204ENST00000587339 IGKV1OR2-108A0A075B7D4 117 aa15.76■□□□□ 0.11
TRIM47-204ENST00000587339 CORTO00230 105 aa15.76■□□□□ 0.11
TRIM47-204ENST00000587339 CYB5BO43169 146 aa15.76■□□□□ 0.11
TRIM47-204ENST00000587339 MFAP2P55001 183 aa15.76■□□□□ 0.11
TRIM47-204ENST00000587339 CX3CL1P78423 397 aa15.76■□□□□ 0.11
TRIM47-204ENST00000587339 C19orf35Q6ZS72 473 aa15.76■□□□□ 0.11
TRIM47-204ENST00000587339 FAM103A1Q9BTL3 118 aaKnown RBP15.76■□□□□ 0.11
TRIM47-204ENST00000587339 ACTR3CQ9C0K3 210 aaPredicted RBP15.76■□□□□ 0.11
TRIM47-204ENST00000587339 SLC25A22Q9H936 323 aa15.76■□□□□ 0.11
TRIM47-204ENST00000587339 A0A0U1RQK1 487 aa15.76■□□□□ 0.11
TRIM47-204ENST00000587339 MAP1LC3B2A6NCE7 125 aa15.76■□□□□ 0.11
TRIM47-204ENST00000587339 RPL29P47914 159 aaKnown RBP15.76■□□□□ 0.11
TRIM47-204ENST00000587339 B2MP61769 119 aa15.76■□□□□ 0.11
TRIM47-204ENST00000587339 PEA15Q15121 130 aa15.76■□□□□ 0.11
TRIM47-204ENST00000587339 ETFRF1Q6IPR1 90 aa15.76■□□□□ 0.11
TRIM47-204ENST00000587339 FAM122CQ6P4D5 195 aa15.76■□□□□ 0.11
TRIM47-204ENST00000587339 Q8N9W7 124 aa15.76■□□□□ 0.11
TRIM47-204ENST00000587339 SCRT1Q9BWW7 348 aa15.76■□□□□ 0.11
TRIM47-204ENST00000587339 MAP1LC3BQ9GZQ8 125 aa15.76■□□□□ 0.11
TRIM47-204ENST00000587339 APCP25054 2843 aa15.76■□□□□ 0.11
TRIM47-204ENST00000587339 CTXND1A0A1B0GTU2 59 aa15.75■□□□□ 0.11
TRIM47-204ENST00000587339 TGFAP01135 160 aa15.75■□□□□ 0.11
TRIM47-204ENST00000587339 GCSAMLQ5JQS6 135 aa15.75■□□□□ 0.11
TRIM47-204ENST00000587339 STPG3Q8N7X2 389 aa15.75■□□□□ 0.11
TRIM47-204ENST00000587339 ARPC1AQ92747 370 aa15.75■□□□□ 0.11
TRIM47-204ENST00000587339 YIF1AO95070 293 aa15.74■□□□□ 0.11
TRIM47-204ENST00000587339 AVPP01185 164 aa15.74■□□□□ 0.11
TRIM47-204ENST00000587339 DEFA4P12838 97 aa15.74■□□□□ 0.11
TRIM47-204ENST00000587339 FGF8P55075 233 aaPredicted RBP15.74■□□□□ 0.11
TRIM47-204ENST00000587339 PRSS57Q6UWY2 283 aa15.74■□□□□ 0.11
TRIM47-204ENST00000587339 CCDC28AQ8IWP9 274 aa15.74■□□□□ 0.11
TRIM47-204ENST00000587339 Q96MF0 132 aa15.74■□□□□ 0.11
TRIM47-204ENST00000587339 RASL11BQ9BPW5 248 aa15.74■□□□□ 0.11
TRIM47-204ENST00000587339 MEGF9Q9H1U4 602 aa15.74■□□□□ 0.11
TRIM47-204ENST00000587339 RBFOX3A6NFN3 312 aa15.74■□□□□ 0.11
TRIM47-204ENST00000587339 EIF3GO75821 320 aaKnown RBP eCLIP15.74■□□□□ 0.11
TRIM47-204ENST00000587339 IGHV3-48P01763 117 aa15.74■□□□□ 0.11
TRIM47-204ENST00000587339 APOC3P02656 99 aa15.74■□□□□ 0.11
TRIM47-204ENST00000587339 CTRB1P17538 263 aa15.74■□□□□ 0.11
TRIM47-204ENST00000587339 CTRB2Q6GPI1 263 aa15.74■□□□□ 0.11
TRIM47-204ENST00000587339 RAB24Q969Q5 203 aa15.74■□□□□ 0.11
TRIM47-204ENST00000587339 WNT10AQ9GZT5 417 aa15.74■□□□□ 0.11
TRIM47-204ENST00000587339 C9JQL5 133 aa15.73■□□□□ 0.11
TRIM47-204ENST00000587339 J3QLI3 93 aa15.73■□□□□ 0.11
TRIM47-204ENST00000587339 HMGB3O15347 200 aaKnown RBP15.73■□□□□ 0.11
TRIM47-204ENST00000587339 OR10J1P30954 320 aa15.73■□□□□ 0.11
TRIM47-204ENST00000587339 CDC34P49427 236 aaPredicted RBP15.73■□□□□ 0.11
TRIM47-204ENST00000587339 PRR20EP86478 221 aa15.73■□□□□ 0.11
TRIM47-204ENST00000587339 PRR20CP86479 221 aa15.73■□□□□ 0.11
TRIM47-204ENST00000587339 PRR20DP86480 221 aa15.73■□□□□ 0.11
TRIM47-204ENST00000587339 PRR20BP86481 221 aa15.73■□□□□ 0.11
TRIM47-204ENST00000587339 PRR20AP86496 221 aa15.73■□□□□ 0.11
TRIM47-204ENST00000587339 KLF17Q5JT82 389 aaPredicted RBP15.73■□□□□ 0.11
TRIM47-204ENST00000587339 NPIPB3Q92617 1050 aa15.73■□□□□ 0.11
TRIM47-204ENST00000587339 SLC45A2Q9UMX9 530 aa15.73■□□□□ 0.11
TRIM47-204ENST00000587339 CELSR1Q9NYQ6 3014 aa15.73■□□□□ 0.11
TRIM47-204ENST00000587339 A0A1W2PPV4 95 aa15.72■□□□□ 0.11
TRIM47-204ENST00000587339 F8W036 122 aa15.72■□□□□ 0.11
TRIM47-204ENST00000587339 HLA-DRB1P01911 266 aa15.72■□□□□ 0.11
TRIM47-204ENST00000587339 SFTA3P0C7M3 94 aa15.72■□□□□ 0.11
TRIM47-204ENST00000587339 NDPQ00604 133 aa15.72■□□□□ 0.11
TRIM47-204ENST00000587339 HAGHQ16775 308 aa15.72■□□□□ 0.11
TRIM47-204ENST00000587339 RARRES2Q99969 163 aa15.72■□□□□ 0.11
TRIM47-204ENST00000587339 SLC25A33Q9BSK2 321 aa15.72■□□□□ 0.11
TRIM47-204ENST00000587339 DMRT1Q9Y5R6 373 aa15.72■□□□□ 0.11
TRIM47-204ENST00000587339 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.72■□□□□ 0.117e-10■■■■□ 25.6
TRIM47-204ENST00000587339 IGHV7-81A0A0B4J1V7 117 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms