RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 RAB3DO95716 219 aa15.2■□□□□ 0.02
SHMT1-209ENST00000582653 CD74P04233 296 aa15.2■□□□□ 0.02
SHMT1-209ENST00000582653 CTSDP07339 412 aaPredicted RBP15.2■□□□□ 0.02
SHMT1-209ENST00000582653 P0C879 139 aa15.2■□□□□ 0.02
SHMT1-209ENST00000582653 TBPP20226 339 aa15.2■□□□□ 0.02
SHMT1-209ENST00000582653 ALDH3B2P48448 385 aa15.2■□□□□ 0.02
SHMT1-209ENST00000582653 AKR1C2P52895 323 aa15.2■□□□□ 0.02
SHMT1-209ENST00000582653 GPR141Q7Z602 305 aa15.2■□□□□ 0.02
SHMT1-209ENST00000582653 WFDC3Q8IUB2 231 aa15.2■□□□□ 0.02
SHMT1-209ENST00000582653 OR13C8Q8NGS7 320 aa15.2■□□□□ 0.02
SHMT1-209ENST00000582653 MARCH1Q8TCQ1 289 aa15.2■□□□□ 0.02
SHMT1-209ENST00000582653 MRPS26Q9BYN8 205 aaKnown RBP15.2■□□□□ 0.02
SHMT1-209ENST00000582653 ST8SIA3O43173 380 aa15.19■□□□□ 0.02
SHMT1-209ENST00000582653 TAS2R19P59542 299 aa15.19■□□□□ 0.02
SHMT1-209ENST00000582653 RELQ04864 619 aaPredicted RBP15.19■□□□□ 0.02
SHMT1-209ENST00000582653 ODF3L2Q3SX64 289 aa15.19■□□□□ 0.02
SHMT1-209ENST00000582653 FAAP20Q6NZ36 180 aa15.19■□□□□ 0.02
SHMT1-209ENST00000582653 STEAP1BQ6NZ63 245 aa15.19■□□□□ 0.02
SHMT1-209ENST00000582653 Q6ZWC4 215 aa15.19■□□□□ 0.02
SHMT1-209ENST00000582653 RNF2Q99496 336 aa15.19■□□□□ 0.02
SHMT1-209ENST00000582653 TXN2Q99757 166 aa15.19■□□□□ 0.02
SHMT1-209ENST00000582653 NXF2Q9GZY0 626 aaKnown RBP15.19■□□□□ 0.02
SHMT1-209ENST00000582653 COPZ2Q9P299 210 aa15.19■□□□□ 0.02
SHMT1-209ENST00000582653 TP53TG1Q9Y2A0 90 aa15.19■□□□□ 0.02
SHMT1-209ENST00000582653 IGHV3OR16-13A0A075B7E8 117 aa15.18■□□□□ 0.02
SHMT1-209ENST00000582653 IGHV3-74A0A0B4J1X5 117 aa15.18■□□□□ 0.02
SHMT1-209ENST00000582653 A0A0G2JRQ6 117 aa15.18■□□□□ 0.02
SHMT1-209ENST00000582653 IGHV7-4-1A0A0J9YVY3 117 aa15.18■□□□□ 0.02
SHMT1-209ENST00000582653 GABARAPH6UMI1 98 aa15.18■□□□□ 0.02
SHMT1-209ENST00000582653 CHEK1O14757 476 aa15.18■□□□□ 0.02
SHMT1-209ENST00000582653 IFNA17P01571 189 aa15.18■□□□□ 0.02
SHMT1-209ENST00000582653 FCGR2BP31994 310 aaPredicted RBP15.18■□□□□ 0.02
SHMT1-209ENST00000582653 ETV6P41212 452 aa15.18■□□□□ 0.02
SHMT1-209ENST00000582653 APOC4P55056 127 aa15.18■□□□□ 0.02
SHMT1-209ENST00000582653 TRIM16LQ309B1 348 aa15.18■□□□□ 0.02
SHMT1-209ENST00000582653 TMEM116Q8NCL8 245 aa15.18■□□□□ 0.02
SHMT1-209ENST00000582653 ZFAND1Q8TCF1 268 aa15.18■□□□□ 0.02
SHMT1-209ENST00000582653 C15orf40Q8WUR7 153 aa15.18■□□□□ 0.02
SHMT1-209ENST00000582653 RHPN1-AS1Q9BWJ2 59 aa15.18■□□□□ 0.02
SHMT1-209ENST00000582653 UBE2CO00762 179 aa15.17■□□□□ 0.02
SHMT1-209ENST00000582653 GNG7O60262 68 aa15.17■□□□□ 0.02
SHMT1-209ENST00000582653 SNCAP37840 140 aa15.17■□□□□ 0.02
SHMT1-209ENST00000582653 SLC35G3Q8N808 338 aa15.17■□□□□ 0.02
SHMT1-209ENST00000582653 CCDC71LQ8N9Z2 235 aa15.17■□□□□ 0.02
SHMT1-209ENST00000582653 OR10C1Q96KK4 312 aa15.17■□□□□ 0.02
SHMT1-209ENST00000582653 IGKV3-7A0A075B6H7 116 aa15.16■□□□□ 0.02
SHMT1-209ENST00000582653 TRAV14DV4A0A0A6YYC5 116 aa15.16■□□□□ 0.02
SHMT1-209ENST00000582653 OR4C46A6NHA9 309 aa15.16■□□□□ 0.02
SHMT1-209ENST00000582653 SPRY2O43597 315 aa15.16■□□□□ 0.02
SHMT1-209ENST00000582653 BMI1P35226 326 aa15.16■□□□□ 0.02
SHMT1-209ENST00000582653 TFPI2P48307 235 aa15.16■□□□□ 0.02
SHMT1-209ENST00000582653 CLVS1Q8IUQ0 354 aaPredicted RBP15.16■□□□□ 0.02
SHMT1-209ENST00000582653 KIR2DL5BA0A0G2JN68 375 aa15.15■□□□□ 0.02
SHMT1-209ENST00000582653 KIR2DL5BA0A0G2JPC4 375 aa15.15■□□□□ 0.02
SHMT1-209ENST00000582653 ATG12O94817 140 aa15.15■□□□□ 0.02
SHMT1-209ENST00000582653 RPL35AP18077 110 aaKnown RBP15.15■□□□□ 0.02
SHMT1-209ENST00000582653 UCP1P25874 307 aa15.15■□□□□ 0.02
SHMT1-209ENST00000582653 TNFRSF9Q07011 255 aa15.15■□□□□ 0.02
SHMT1-209ENST00000582653 ZNF124Q15973 351 aa15.15■□□□□ 0.02
SHMT1-209ENST00000582653 Q6ZRM9 215 aa15.15■□□□□ 0.02
SHMT1-209ENST00000582653 APRG1Q8IVJ8 170 aa15.15■□□□□ 0.02
SHMT1-209ENST00000582653 KIR2DL5AQ8N109 375 aa15.15■□□□□ 0.02
SHMT1-209ENST00000582653 KIR2DL5BQ8NHK3 375 aa15.15■□□□□ 0.02
SHMT1-209ENST00000582653 RTBDNQ9BSG5 229 aaPredicted RBP15.15■□□□□ 0.02
SHMT1-209ENST00000582653 PDCD10Q9BUL8 212 aa15.15■□□□□ 0.02
SHMT1-209ENST00000582653 INS-IGF2F8WCM5 200 aa15.14■□□□□ 0.01
SHMT1-209ENST00000582653 RNASE2P10153 161 aaKnown RBP15.14■□□□□ 0.01
SHMT1-209ENST00000582653 MLANAQ16655 118 aa15.14■□□□□ 0.01
SHMT1-209ENST00000582653 DEFB135Q30KP9 77 aa15.14■□□□□ 0.01
SHMT1-209ENST00000582653 TOMM20LQ6UXN7 152 aa15.14■□□□□ 0.01
SHMT1-209ENST00000582653 DUSP18Q8NEJ0 188 aa15.14■□□□□ 0.01
SHMT1-209ENST00000582653 RRNAD1Q96FB5 475 aaKnown RBP15.14■□□□□ 0.01
SHMT1-209ENST00000582653 TMEM50AO95807 157 aa15.13■□□□□ 0.01
SHMT1-209ENST00000582653 APOHP02749 345 aaPredicted RBP15.13■□□□□ 0.01
SHMT1-209ENST00000582653 OR5AC1P0C628 307 aa15.13■□□□□ 0.01
SHMT1-209ENST00000582653 NPBWR1P48145 328 aa15.13■□□□□ 0.01
SHMT1-209ENST00000582653 HOXA1P49639 335 aaPredicted RBP15.13■□□□□ 0.01
SHMT1-209ENST00000582653 SSBP1Q04837 148 aaKnown RBP15.13■□□□□ 0.01
SHMT1-209ENST00000582653 FAM90A2PQ658T7 463 aa15.13■□□□□ 0.01
SHMT1-209ENST00000582653 PVRIGQ6DKI7 326 aa15.13■□□□□ 0.01
SHMT1-209ENST00000582653 GBGT1Q8N5D6 347 aa15.13■□□□□ 0.01
SHMT1-209ENST00000582653 STPG3Q8N7X2 389 aa15.13■□□□□ 0.01
SHMT1-209ENST00000582653 RNASE11Q8TAA1 199 aaKnown RBP15.13■□□□□ 0.01
SHMT1-209ENST00000582653 LHFPL5Q8TAF8 219 aa15.13■□□□□ 0.01
SHMT1-209ENST00000582653 SMIM4Q8WVI0 70 aa15.13■□□□□ 0.01
SHMT1-209ENST00000582653 RNF183Q96D59 192 aa15.13■□□□□ 0.01
SHMT1-209ENST00000582653 GALNT14Q96FL9 552 aa15.13■□□□□ 0.01
SHMT1-209ENST00000582653 DIRAS2Q96HU8 199 aa15.13■□□□□ 0.01
SHMT1-209ENST00000582653 MRPL36Q9P0J6 103 aaKnown RBP15.13■□□□□ 0.01
SHMT1-209ENST00000582653 IGHV3-66A0A0C4DH42 116 aa15.12■□□□□ 0.01
SHMT1-209ENST00000582653 A0A0J9YWU9 116 aa15.12■□□□□ 0.01
SHMT1-209ENST00000582653 CDS2O95674 445 aa15.12■□□□□ 0.01
SHMT1-209ENST00000582653 CMC4P56277 68 aaPredicted RBP15.12■□□□□ 0.01
SHMT1-209ENST00000582653 MRPS10P82664 201 aaKnown RBP15.12■□□□□ 0.01
SHMT1-209ENST00000582653 EWSR1Q01844 656 aaKnown RBP eCLIP15.12■□□□□ 0.01
SHMT1-209ENST00000582653 IL18Q14116 193 aa15.12■□□□□ 0.01
SHMT1-209ENST00000582653 MEF2DQ14814 521 aa15.12■□□□□ 0.01
SHMT1-209ENST00000582653 LYG2Q86SG7 212 aa15.12■□□□□ 0.01
SHMT1-209ENST00000582653 LILRB2Q8N423 598 aa15.12■□□□□ 0.01
SHMT1-209ENST00000582653 OR4C16Q8NGL9 310 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms