RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 MEIKINA0A087WXM9 373 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 PSMD12O00232 456 aaPredicted RBP1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 OR2J2O76002 312 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 IGKV2D-40P01614 121 aaPredicted RBP1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 HIST1H2BOP23527 126 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 HIST1H2BBP33778 126 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 FXYD2P54710 66 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 HIST1H2BDP58876 126 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 HIST1H2BCP62807 126 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 ZNF345Q14585 488 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 NNATQ16517 81 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 HIST2H2BEQ16778 126 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 C9orf64Q5T6V5 341 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 DHFR2Q86XF0 187 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 OR13C4Q8NGS5 318 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 TERB2Q8NHR7 220 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 H1FXQ92522 213 aaKnown RBP1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 HIST1H2BHQ93079 126 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 HIST1H2BNQ99877 126 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 HIST1H2BMQ99879 126 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 DCSTAMPQ9H295 470 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 OR51V1Q9H2C8 321 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 CST9LQ9H4G1 147 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 FAM96AQ9H5X1 160 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 EML6Q6ZMW3 1958 aa1.1□□□□□ -2.23
SMCHD1-204ENST00000581226 IGKV3D-7A0A0C4DH55 119 aa1.09□□□□□ -2.23
SMCHD1-204ENST00000581226 IGKV3OR2-268A0A0C4DH90 116 aa1.09□□□□□ -2.23
SMCHD1-204ENST00000581226 EXOC1LA0A1B0GW35 172 aa1.09□□□□□ -2.23
SMCHD1-204ENST00000581226 IRGMA1A4Y4 181 aa1.09□□□□□ -2.23
SMCHD1-204ENST00000581226 TRAPPC13A5PLN9 417 aa1.09□□□□□ -2.23
SMCHD1-204ENST00000581226 SLC22A1O15245 554 aa1.09□□□□□ -2.23
SMCHD1-204ENST00000581226 ORC5O43913 435 aa1.09□□□□□ -2.23
SMCHD1-204ENST00000581226 RPP14O95059 124 aaKnown RBP1.09□□□□□ -2.23
SMCHD1-204ENST00000581226 HAND1O96004 215 aa1.09□□□□□ -2.23
SMCHD1-204ENST00000581226 AKR1C3P42330 323 aa1.09□□□□□ -2.23
SMCHD1-204ENST00000581226 OMPP47874 163 aa1.09□□□□□ -2.23
SMCHD1-204ENST00000581226 HBA1P69905 142 aa1.09□□□□□ -2.23
SMCHD1-204ENST00000581226 Q8N2B8 174 aa1.09□□□□□ -2.23
SMCHD1-204ENST00000581226 ANKRD29Q8N6D5 301 aa1.09□□□□□ -2.23
SMCHD1-204ENST00000581226 RNASE7Q9H1E1 156 aaKnown RBP1.09□□□□□ -2.23
SMCHD1-204ENST00000581226 IDI2-AS1Q9NZ38 188 aa1.09□□□□□ -2.23
SMCHD1-204ENST00000581226 POLEQ07864 2286 aa1.09□□□□□ -2.24
SMCHD1-204ENST00000581226 PCF11O94913 1555 aaKnown RBP1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 TNRC6BQ9UPQ9 1833 aaKnown RBP1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 PIK3C2GO75747 1445 aa1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 SETD5Q9C0A6 1442 aa1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 DPRXA6NFQ7 191 aa1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 SMIM23A6NLE4 172 aa1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 F8W036 122 aa1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 FADS1O60427 444 aa1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 CRPP02741 224 aa1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 CTSDP07339 412 aaPredicted RBP1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 CCL7P80098 99 aa1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 SRSF6Q13247 344 aaKnown RBP1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 RPL22L1Q6P5R6 122 aaKnown RBP1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 TMEM86AQ8N2M4 240 aa1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 OR8B3Q8NGG8 313 aa1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 TOMM6Q96B49 74 aa1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 TMEM147Q9BVK8 224 aa1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 PRTFDC1Q9NRG1 225 aa1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 C14orf105Q9NVL8 296 aa1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 SLC22A13Q9Y226 551 aa1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 PRELID3BQ9Y3B1 194 aa1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 TMEM56-RWDD3S4R434 201 aa1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 DENND4CQ5VZ89 1909 aa1.08□□□□□ -2.24
SMCHD1-204ENST00000581226 SBF1O95248 1867 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 CEP192Q8TEP8 1941 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 TMEM114B3SHH9 223 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 ZNF682O95780 498 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 S100A6P06703 90 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 SMIM10L2AP0DMW4 78 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 SMIM10L2BP0DMW5 78 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 CDC42P60953 191 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 ZNF846Q147U1 533 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 IAH1Q2TAA2 248 aaPredicted RBP1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 C12orf74Q32Q52 190 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 LCN15Q6UWW0 184 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 UNQ6190/PRO20217Q6UXQ8 127 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 Q6ZQT0 140 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 MBD3L1Q8WWY6 194 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 C11orf40Q8WZ69 217 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 PPP1R14BQ96C90 147 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 DCUN1D1Q96GG9 259 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 C20orf27Q9GZN8 174 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 KIF1BO60333 1816 aa1.07□□□□□ -2.24
SMCHD1-204ENST00000581226 IGKV1D-42A0A075B6H8 117 aa1.06□□□□□ -2.24
SMCHD1-204ENST00000581226 hADV38S2A0JD32 116 aa1.06□□□□□ -2.24
SMCHD1-204ENST00000581226 CRYGAP11844 174 aa1.06□□□□□ -2.24
SMCHD1-204ENST00000581226 RNASE3P12724 160 aaKnown RBP1.06□□□□□ -2.24
SMCHD1-204ENST00000581226 CYBAP13498 195 aa1.06□□□□□ -2.24
SMCHD1-204ENST00000581226 NFYAP23511 347 aaPredicted RBP1.06□□□□□ -2.24
SMCHD1-204ENST00000581226 EIF2B2P49770 351 aaKnown RBP1.06□□□□□ -2.24
SMCHD1-204ENST00000581226 CEBPGP53567 150 aa1.06□□□□□ -2.24
SMCHD1-204ENST00000581226 CLVS1Q8IUQ0 354 aaPredicted RBP1.06□□□□□ -2.24
SMCHD1-204ENST00000581226 TLNRD1Q9H1K6 362 aa1.06□□□□□ -2.24
SMCHD1-204ENST00000581226 CYSLTR1Q9Y271 337 aa1.06□□□□□ -2.24
SMCHD1-204ENST00000581226 TTC21AQ8NDW8 1320 aa1.06□□□□□ -2.24
SMCHD1-204ENST00000581226 OBSL1O75147 1896 aa1.05□□□□□ -2.24
SMCHD1-204ENST00000581226 TNRC6AQ8NDV7 1962 aaKnown RBP1.05□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms