RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 Q6ZRM9 215 aa14.83□□□□□ -0.04
SS18-209ENST00000578595 GPHB5Q86YW7 130 aa14.83□□□□□ -0.04
SS18-209ENST00000578595 ZNF114Q8NC26 417 aa14.83□□□□□ -0.04
SS18-209ENST00000578595 IL22RA2Q969J5 263 aa14.83□□□□□ -0.04
SS18-209ENST00000578595 BSCL2Q96G97 398 aaPredicted RBP14.83□□□□□ -0.04
SS18-209ENST00000578595 HEYLQ9NQ87 328 aaPredicted RBP14.83□□□□□ -0.04
SS18-209ENST00000578595 SELENOKQ9Y6D0 94 aa14.83□□□□□ -0.04
SS18-209ENST00000578595 C2orf70A6NJV1 201 aa14.82□□□□□ -0.04
SS18-209ENST00000578595 LGALS9O00182 355 aa14.82□□□□□ -0.04
SS18-209ENST00000578595 MT-CO2P00403 227 aa14.82□□□□□ -0.04
SS18-209ENST00000578595 IL7P13232 177 aa14.82□□□□□ -0.04
SS18-209ENST00000578595 EDN2P20800 178 aa14.82□□□□□ -0.04
SS18-209ENST00000578595 SPCS3P61009 180 aa14.82□□□□□ -0.04
SS18-209ENST00000578595 CACNG8Q8WXS5 425 aa14.82□□□□□ -0.04
SS18-209ENST00000578595 PALMDQ9NP74 551 aa14.82□□□□□ -0.04
SS18-209ENST00000578595 SMAD5-AS1Q9Y6J3 95 aa14.82□□□□□ -0.04
SS18-209ENST00000578595 A0A0B4J2A0 478 aa14.81□□□□□ -0.04
SS18-209ENST00000578595 FOLR2P14207 255 aa14.81□□□□□ -0.04
SS18-209ENST00000578595 MFAP4P55083 255 aa14.81□□□□□ -0.04
SS18-209ENST00000578595 SPSB3Q6PJ21 355 aa14.81□□□□□ -0.04
SS18-209ENST00000578595 LYZL2Q7Z4W2 148 aa14.81□□□□□ -0.04
SS18-209ENST00000578595 C20orf24Q9BUV8 137 aa14.81□□□□□ -0.04
SS18-209ENST00000578595 GAR1Q9NY12 217 aaKnown RBP14.81□□□□□ -0.04
SS18-209ENST00000578595 SHPKQ9UHJ6 478 aa14.81□□□□□ -0.04
SS18-209ENST00000578595 PIGBOS1A0A0B4J2F0 54 aa14.8□□□□□ -0.04
SS18-209ENST00000578595 NUPL2O15504 423 aaKnown RBP14.8□□□□□ -0.04
SS18-209ENST00000578595 GNG7O60262 68 aa14.8□□□□□ -0.04
SS18-209ENST00000578595 OR1S1Q8NH92 325 aa14.8□□□□□ -0.04
SS18-209ENST00000578595 SDHCQ99643 169 aaPredicted RBP14.8□□□□□ -0.04
SS18-209ENST00000578595 SIGLEC8Q9NYZ4 499 aa14.8□□□□□ -0.04
SS18-209ENST00000578595 UFC1Q9Y3C8 167 aa14.8□□□□□ -0.04
SS18-209ENST00000578595 LSM4Q9Y4Z0 139 aaKnown RBP14.8□□□□□ -0.04
SS18-209ENST00000578595 RNASE2P10153 161 aaKnown RBP14.79□□□□□ -0.04
SS18-209ENST00000578595 OPRK1P41145 380 aa14.79□□□□□ -0.04
SS18-209ENST00000578595 PPP1R1AQ13522 171 aa14.79□□□□□ -0.04
SS18-209ENST00000578595 SMCO1Q147U7 214 aa14.79□□□□□ -0.04
SS18-209ENST00000578595 GUCA2BQ16661 112 aa14.79□□□□□ -0.04
SS18-209ENST00000578595 CNPY1Q3B7I2 92 aa14.79□□□□□ -0.04
SS18-209ENST00000578595 CD300EQ496F6 205 aaPredicted RBP14.79□□□□□ -0.04
SS18-209ENST00000578595 TM4SF20Q53R12 229 aa14.79□□□□□ -0.04
SS18-209ENST00000578595 UNQ9165/PRO28630Q6UXU0 137 aa14.79□□□□□ -0.04
SS18-209ENST00000578595 GTSCR1Q86UQ5 136 aa14.79□□□□□ -0.04
SS18-209ENST00000578595 B9D2Q9BPU9 175 aa14.79□□□□□ -0.04
SS18-209ENST00000578595 CHRDL1Q9BU40 450 aa14.79□□□□□ -0.04
SS18-209ENST00000578595 IGHV3OR16-8A0A075B7F1 116 aa14.78□□□□□ -0.04
SS18-209ENST00000578595 TMEM213A2RRL7 107 aa14.78□□□□□ -0.04
SS18-209ENST00000578595 IZUMO1RA6ND01 250 aa14.78□□□□□ -0.04
SS18-209ENST00000578595 A8MWP6 167 aa14.78□□□□□ -0.04
SS18-209ENST00000578595 I3L2K1 104 aa14.78□□□□□ -0.04
SS18-209ENST00000578595 CORTO00230 105 aa14.78□□□□□ -0.04
SS18-209ENST00000578595 YIF1AO95070 293 aa14.78□□□□□ -0.04
SS18-209ENST00000578595 CBLN1P23435 193 aa14.78□□□□□ -0.04
SS18-209ENST00000578595 UXS1Q8NBZ7 420 aa14.78□□□□□ -0.04
SS18-209ENST00000578595 DUSP18Q8NEJ0 188 aa14.78□□□□□ -0.04
SS18-209ENST00000578595 OR52E5Q8NH55 327 aa14.78□□□□□ -0.04
SS18-209ENST00000578595 ASCL2Q99929 193 aa14.78□□□□□ -0.04
SS18-209ENST00000578595 C7orf50Q9BRJ6 194 aaKnown RBP14.78□□□□□ -0.04
SS18-209ENST00000578595 HIPK2Q9H2X6 1198 aa14.78□□□□□ -0.04
SS18-209ENST00000578595 INS-IGF2F8WCM5 200 aa14.77□□□□□ -0.05
SS18-209ENST00000578595 ZNF207O43670 478 aaKnown RBP14.77□□□□□ -0.05
SS18-209ENST00000578595 NDUFB6O95139 128 aa14.77□□□□□ -0.05
SS18-209ENST00000578595 SFT2D2O95562 160 aa14.77□□□□□ -0.05
SS18-209ENST00000578595 HTR2BP41595 481 aa14.77□□□□□ -0.05
SS18-209ENST00000578595 RELQ04864 619 aaPredicted RBP14.77□□□□□ -0.05
SS18-209ENST00000578595 ANKRD55Q3KP44 614 aa14.77□□□□□ -0.05
SS18-209ENST00000578595 NMSQ5H8A3 153 aa14.77□□□□□ -0.05
SS18-209ENST00000578595 BTNL8Q6UX41 500 aa14.77□□□□□ -0.05
SS18-209ENST00000578595 ADAMTSL5Q6ZMM2 481 aa14.77□□□□□ -0.05
SS18-209ENST00000578595 SLC24A4Q8NFF2 622 aa14.77□□□□□ -0.05
SS18-209ENST00000578595 OR2K2Q8NGT1 345 aa14.77□□□□□ -0.05
SS18-209ENST00000578595 TMEM190Q8WZ59 177 aa14.77□□□□□ -0.05
SS18-209ENST00000578595 FLVCR2Q9UPI3 526 aa14.77□□□□□ -0.05
SS18-209ENST00000578595 NDUFA4O00483 81 aa14.76□□□□□ -0.05
SS18-209ENST00000578595 HOXB5P09067 269 aa14.76□□□□□ -0.05
SS18-209ENST00000578595 NPBWR1P48145 328 aa14.76□□□□□ -0.05
SS18-209ENST00000578595 ATP6V0BQ99437 205 aa14.76□□□□□ -0.05
SS18-209ENST00000578595 TXN2Q99757 166 aa14.76□□□□□ -0.05
SS18-209ENST00000578595 ZNF436Q9C0F3 470 aaPredicted RBP14.76□□□□□ -0.05
SS18-209ENST00000578595 TECRQ9NZ01 308 aaKnown RBP14.76□□□□□ -0.05
SS18-209ENST00000578595 CACFD1Q9UGQ2 172 aa14.76□□□□□ -0.05
SS18-209ENST00000578595 DUXBA0A1W2PPF3 345 aa14.75□□□□□ -0.05
SS18-209ENST00000578595 F8W735 103 aaPredicted RBP14.75□□□□□ -0.05
SS18-209ENST00000578595 SCGB2A1O75556 95 aa14.75□□□□□ -0.05
SS18-209ENST00000578595 IFNA10P01566 189 aa14.75□□□□□ -0.05
SS18-209ENST00000578595 ADMP35318 185 aa14.75□□□□□ -0.05
SS18-209ENST00000578595 TNFRSF9Q07011 255 aa14.75□□□□□ -0.05
SS18-209ENST00000578595 DEFB114Q30KQ6 69 aa14.75□□□□□ -0.05
SS18-209ENST00000578595 MARC2Q969Z3 335 aa14.75□□□□□ -0.05
SS18-209ENST00000578595 WDR89Q96FK6 387 aaPredicted RBP14.75□□□□□ -0.05
SS18-209ENST00000578595 DAZ1Q9NQZ3 744 aaKnown RBP14.75□□□□□ -0.05
SS18-209ENST00000578595 A0A1B0GU03 582 aa14.74□□□□□ -0.05
SS18-209ENST00000578595 RPS10-NUDT3A0A1W2PQS6 291 aa14.74□□□□□ -0.05
SS18-209ENST00000578595 LYRM1O43325 122 aa14.74□□□□□ -0.05
SS18-209ENST00000578595 SCAF4O95104 1147 aaKnown RBP14.74□□□□□ -0.05
SS18-209ENST00000578595 CTSGP08311 255 aa14.74□□□□□ -0.05
SS18-209ENST00000578595 NPY1RP25929 384 aa14.74□□□□□ -0.05
SS18-209ENST00000578595 ELLP55199 621 aaPredicted RBP14.74□□□□□ -0.05
SS18-209ENST00000578595 CD81P60033 236 aa14.74□□□□□ -0.05
SS18-209ENST00000578595 UBE2MP61081 183 aaKnown RBP14.74□□□□□ -0.05
SS18-209ENST00000578595 AARDQ4LEZ3 155 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms