RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 LILRB2Q8N423 598 aa12.03□□□□□ -0.48
SS18-206ENST00000577572 TMEM217Q8N7C4 229 aa12.03□□□□□ -0.48
SS18-206ENST00000577572 LFNGQ8NES3 379 aa12.03□□□□□ -0.48
SS18-206ENST00000577572 PHYHIPLQ96FC7 376 aa12.03□□□□□ -0.48
SS18-206ENST00000577572 WNT10AQ9GZT5 417 aa12.03□□□□□ -0.48
SS18-206ENST00000577572 CYTL1Q9NRR1 136 aa12.03□□□□□ -0.48
SS18-206ENST00000577572 UQCC1Q9NVA1 299 aa12.03□□□□□ -0.48
SS18-206ENST00000577572 PAIP2BQ9ULR5 123 aaKnown RBP12.03□□□□□ -0.48
SS18-206ENST00000577572 TMEM89A2RUT3 159 aa12.02□□□□□ -0.49
SS18-206ENST00000577572 SOX15O60248 233 aa12.02□□□□□ -0.49
SS18-206ENST00000577572 MPDU1O75352 247 aa12.02□□□□□ -0.49
SS18-206ENST00000577572 TPT1P13693 172 aaKnown RBP12.02□□□□□ -0.49
SS18-206ENST00000577572 UBA52P62987 128 aaKnown RBP12.02□□□□□ -0.49
SS18-206ENST00000577572 CD69Q07108 199 aa12.02□□□□□ -0.49
SS18-206ENST00000577572 ARL16Q0P5N6 197 aa12.02□□□□□ -0.49
SS18-206ENST00000577572 OR8G2PQ6IF36 304 aa12.02□□□□□ -0.49
SS18-206ENST00000577572 UNQ5815/PRO19632Q6UWF5 114 aa12.02□□□□□ -0.49
SS18-206ENST00000577572 FAM103A1Q9BTL3 118 aaKnown RBP12.02□□□□□ -0.49
SS18-206ENST00000577572 ZNF471Q9BX82 626 aaPredicted RBP12.02□□□□□ -0.49
SS18-206ENST00000577572 ARV1Q9H2C2 271 aa12.02□□□□□ -0.49
SS18-206ENST00000577572 SLA2Q9H6Q3 261 aa12.02□□□□□ -0.49
SS18-206ENST00000577572 NPVFQ9HCQ7 196 aa12.02□□□□□ -0.49
SS18-206ENST00000577572 FBXO7Q9Y3I1 522 aa12.02□□□□□ -0.49
SS18-206ENST00000577572 ANK3Q12955 4377 aaKnown RBP12.01□□□□□ -0.49
SS18-206ENST00000577572 IGLV11-55A0A075B6I3 123 aa12.01□□□□□ -0.49
SS18-206ENST00000577572 INAFM1C9JVW0 142 aa12.01□□□□□ -0.49
SS18-206ENST00000577572 C9orf152Q5JTZ5 239 aa12.01□□□□□ -0.49
SS18-206ENST00000577572 BAP18Q8IXM2 172 aa12.01□□□□□ -0.49
SS18-206ENST00000577572 ATP6V0BQ99437 205 aa12.01□□□□□ -0.49
SS18-206ENST00000577572 GSX1Q9H4S2 264 aaPredicted RBP12.01□□□□□ -0.49
SS18-206ENST00000577572 TET2Q6N021 2002 aaPredicted RBP12.01□□□□□ -0.49
SS18-206ENST00000577572 SONP18583 2426 aaKnown RBP12□□□□□ -0.49
SS18-206ENST00000577572 HIVEP1P15822 2718 aa12□□□□□ -0.49
SS18-206ENST00000577572 CLINT1Q14677 625 aa12□□□□□ -0.49
SS18-206ENST00000577572 SLC25A24Q6NUK1 477 aa12□□□□□ -0.49
SS18-206ENST00000577572 SCGB1C1Q8TD33 95 aa12□□□□□ -0.49
SS18-206ENST00000577572 GNPNAT1Q96EK6 184 aaPredicted RBP12□□□□□ -0.49
SS18-206ENST00000577572 BOLA1Q9Y3E2 137 aa12□□□□□ -0.49
SS18-206ENST00000577572 CELSR1Q9NYQ6 3014 aa12□□□□□ -0.49
SS18-206ENST00000577572 TRBV9A0A0B4J1U6 114 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 REG1AP05451 166 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 MDKP21741 143 aaPredicted RBP11.99□□□□□ -0.49
SS18-206ENST00000577572 PPIFP30405 207 aaKnown RBP11.99□□□□□ -0.49
SS18-206ENST00000577572 FCGR2BP31994 310 aaPredicted RBP11.99□□□□□ -0.49
SS18-206ENST00000577572 OPRK1P41145 380 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 RAB31Q13636 194 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 ECSCRQ19T08 205 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 RPL7L1Q6DKI1 246 aaKnown RBP11.99□□□□□ -0.49
SS18-206ENST00000577572 SLC16A13Q7RTY0 426 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 TMEM144Q7Z5S9 345 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 CENPVQ7Z7K6 275 aaPredicted RBP11.99□□□□□ -0.49
SS18-206ENST00000577572 NECAP1Q8NC96 275 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 TMEM116Q8NCL8 245 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 VN1R17PQ8TDU5 208 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 ST8SIA2Q92186 375 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 BSCL2Q96G97 398 aaPredicted RBP11.99□□□□□ -0.49
SS18-206ENST00000577572 SLC35E1Q96K37 410 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 FANCD2OSQ96PS1 177 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 GINS3Q9BRX5 216 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 SMIM3Q9BZL3 60 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 ZNF702PQ9H963 129 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 WFDC1Q9HC57 220 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 ESM1Q9NQ30 184 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 KCNIP2Q9NS61 270 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 WDR83OSQ9Y284 106 aa11.99□□□□□ -0.49
SS18-206ENST00000577572 MXRA5Q9NR99 2828 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 FAM223BA6NKX1 122 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 LINC01548A6NM66 108 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 I3L2K1 104 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 TCF21O43680 179 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 CRYBA1P05813 215 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 SEC11BP0C7V7 166 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 MFAP2P55001 183 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 SLC35B1P78383 322 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 CFHR3Q02985 330 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 FAM209BQ5JX69 171 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 FAM223AQ8IWN6 122 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 COMMD1Q8N668 190 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 OR2T6Q8NHC8 308 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 MISP3Q96FF7 219 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 CXorf58Q96LI9 332 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 TXN2Q99757 166 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 WDR61Q9GZS3 305 aaKnown RBP11.98□□□□□ -0.49
SS18-206ENST00000577572 TNFRSF19Q9NS68 423 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 GAR1Q9NY12 217 aaKnown RBP11.98□□□□□ -0.49
SS18-206ENST00000577572 TIMM9Q9Y5J7 89 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 DMRT1Q9Y5R6 373 aa11.98□□□□□ -0.49
SS18-206ENST00000577572 FAM181BA6NEQ2 426 aa11.97□□□□□ -0.49
SS18-206ENST00000577572 SH2D7A6NKC9 451 aaPredicted RBP11.97□□□□□ -0.49
SS18-206ENST00000577572 SCGB2A1O75556 95 aa11.97□□□□□ -0.49
SS18-206ENST00000577572 IFNA7P01567 189 aa11.97□□□□□ -0.49
SS18-206ENST00000577572 IGLV1-40P01703 118 aa11.97□□□□□ -0.49
SS18-206ENST00000577572 IGHG4P01861 327 aa11.97□□□□□ -0.49
SS18-206ENST00000577572 APELAP0DMC3 54 aa11.97□□□□□ -0.49
SS18-206ENST00000577572 ARSJQ5FYB0 599 aaPredicted RBP11.97□□□□□ -0.49
SS18-206ENST00000577572 TEPPQ6URK8 271 aa11.97□□□□□ -0.49
SS18-206ENST00000577572 TEX261Q6UWH6 196 aa11.97□□□□□ -0.49
SS18-206ENST00000577572 OR5T1Q8NG75 326 aa11.97□□□□□ -0.49
SS18-206ENST00000577572 OR4X1Q8NH49 305 aa11.97□□□□□ -0.49
SS18-206ENST00000577572 TAF15Q92804 592 aaKnown RBP eCLIP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms