RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 A0A1W2PRX2 142 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 K7EPK0 472 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 LGALS1P09382 135 aaKnown RBP13.25□□□□□ -0.29
NUP88-210ENST00000574867 CXCL3P19876 107 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 TAS2R30P59541 319 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 S100A10P60903 97 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 DEFA5Q01523 94 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 EXOSC2Q13868 293 aaKnown RBP13.25□□□□□ -0.29
NUP88-210ENST00000574867 C11orf87Q6NUJ2 197 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 Q6ZNX1 250 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 OR11H7Q8NGC8 314 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 MISP3Q96FF7 219 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 GNB4Q9HAV0 340 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 LSM5Q9Y4Y9 91 aaKnown RBP13.25□□□□□ -0.29
NUP88-210ENST00000574867 NDUFB8O95169 186 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 PVALBP20472 110 aaPredicted RBP13.25□□□□□ -0.29
NUP88-210ENST00000574867 RUNX1Q01196 453 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 RAB32Q13637 225 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 NSUN5P1Q3KNT7 163 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 HIST2H2BDQ6DRA6 164 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 RNASEH2CQ8TDP1 164 aaKnown RBP13.25□□□□□ -0.29
NUP88-210ENST00000574867 VN1R17PQ8TDU5 208 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 EEF1AKMT3Q96AZ1 226 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 SMIM8Q96KF7 97 aa13.25□□□□□ -0.29
NUP88-210ENST00000574867 I3L521 148 aa13.24□□□□□ -0.29
NUP88-210ENST00000574867 L7N2F9 121 aa13.24□□□□□ -0.29
NUP88-210ENST00000574867 TSC22D2O75157 780 aa13.24□□□□□ -0.29
NUP88-210ENST00000574867 IGHV3-11P01762 117 aa13.24□□□□□ -0.29
NUP88-210ENST00000574867 PET100P0DJ07 73 aa13.24□□□□□ -0.29
NUP88-210ENST00000574867 RAB11AP62491 216 aa13.24□□□□□ -0.29
NUP88-210ENST00000574867 VAMP2P63027 116 aa13.24□□□□□ -0.29
NUP88-210ENST00000574867 ZNF343Q6P1L6 599 aa13.24□□□□□ -0.29
NUP88-210ENST00000574867 TMEM170AQ8WVE7 144 aa13.24□□□□□ -0.29
NUP88-210ENST00000574867 PSENENQ9NZ42 101 aa13.24□□□□□ -0.29
NUP88-210ENST00000574867 STRAPQ9Y3F4 350 aaKnown RBP13.24□□□□□ -0.29
NUP88-210ENST00000574867 TRBV7-1A0A0A6YYK4 115 aa13.23□□□□□ -0.29
NUP88-210ENST00000574867 C15orf62A8K5M9 175 aa13.23□□□□□ -0.29
NUP88-210ENST00000574867 K7EIM0 57 aa13.23□□□□□ -0.29
NUP88-210ENST00000574867 M0QZ24 198 aa13.23□□□□□ -0.29
NUP88-210ENST00000574867 C18orf65Q6ZTR6 163 aa13.23□□□□□ -0.29
NUP88-210ENST00000574867 OR4F17Q8NGA8 305 aa13.23□□□□□ -0.29
NUP88-210ENST00000574867 PPP1R1CQ8WVI7 109 aa13.23□□□□□ -0.29
NUP88-210ENST00000574867 PINX1Q96BK5 328 aaKnown RBP13.23□□□□□ -0.29
NUP88-210ENST00000574867 OR4F4Q96R69 305 aa13.23□□□□□ -0.29
NUP88-210ENST00000574867 ATP6V0BQ99437 205 aa13.23□□□□□ -0.29
NUP88-210ENST00000574867 ZNF436Q9C0F3 470 aaPredicted RBP13.23□□□□□ -0.29
NUP88-210ENST00000574867 RPS10-NUDT3A0A1W2PQS6 291 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 MFSD2BA6NFX1 497 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 I3L2K1 104 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 TMEM50AO95807 157 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 MT-CO2P00403 227 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 RLN2P04090 185 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 GIPP09681 153 aaPredicted RBP13.22□□□□□ -0.29
NUP88-210ENST00000574867 OR8U8P0C7N1 319 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 OPRK1P41145 380 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 SPANXN5Q5MJ07 72 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 C8orf86Q6ZUL3 223 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 OR5B12Q96R08 314 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 H3BP45 60 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 DEDDO75618 318 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 IFNA4P05014 189 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 PAX9P55771 341 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 ZNF502Q8TBZ5 544 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 SCARB1Q8WTV0 552 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 OR4C12Q96R67 309 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 C21orf62Q9NYP8 219 aa13.22□□□□□ -0.29
NUP88-210ENST00000574867 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.21□□□□□ -0.29
NUP88-210ENST00000574867 LRRC37A5PQ49AS3 106 aa13.21□□□□□ -0.29
NUP88-210ENST00000574867 ETFRF1Q6IPR1 90 aa13.21□□□□□ -0.29
NUP88-210ENST00000574867 CCDC140Q96MF4 163 aa13.21□□□□□ -0.29
NUP88-210ENST00000574867 C11orf1Q9H5F2 150 aa13.21□□□□□ -0.29
NUP88-210ENST00000574867 PAIP2BQ9ULR5 123 aaKnown RBP13.21□□□□□ -0.29
NUP88-210ENST00000574867 GAR1Q9NY12 217 aaKnown RBP13.2□□□□□ -0.3
NUP88-210ENST00000574867 PEF1Q9UBV8 284 aaKnown RBP13.2□□□□□ -0.3
NUP88-210ENST00000574867 SCAF4O95104 1147 aaKnown RBP13.2□□□□□ -0.3
NUP88-210ENST00000574867 MPC2O95563 127 aa13.2□□□□□ -0.3
NUP88-210ENST00000574867 SLC25A4P12235 298 aa13.2□□□□□ -0.3
NUP88-210ENST00000574867 FCGR2BP31994 310 aaPredicted RBP13.2□□□□□ -0.3
NUP88-210ENST00000574867 RAP2BP61225 183 aa13.2□□□□□ -0.3
NUP88-210ENST00000574867 TMEM14EPQ6UXP3 125 aa13.2□□□□□ -0.3
NUP88-210ENST00000574867 ETV3LQ6ZN32 361 aa13.2□□□□□ -0.3
NUP88-210ENST00000574867 WDR89Q96FK6 387 aaPredicted RBP13.2□□□□□ -0.3
NUP88-210ENST00000574867 TXN2Q99757 166 aa13.2□□□□□ -0.3
NUP88-210ENST00000574867 RANGRFQ9HD47 186 aaPredicted RBP13.2□□□□□ -0.3
NUP88-210ENST00000574867 LYRM2Q9NU23 88 aaPredicted RBP13.2□□□□□ -0.3
NUP88-210ENST00000574867 E5RGE8 158 aa13.19□□□□□ -0.3
NUP88-210ENST00000574867 HSPB1P04792 205 aaKnown RBP13.19□□□□□ -0.3
NUP88-210ENST00000574867 CAV2P51636 162 aa13.19□□□□□ -0.3
NUP88-210ENST00000574867 ZNF616Q08AN1 781 aa13.19□□□□□ -0.3
NUP88-210ENST00000574867 DEFB136Q30KP8 78 aa13.19□□□□□ -0.3
NUP88-210ENST00000574867 FNDC4Q9H6D8 234 aaPredicted RBP13.19□□□□□ -0.3
NUP88-210ENST00000574867 S4R3C0 116 aa13.19□□□□□ -0.3
NUP88-210ENST00000574867 IGHV3-21A0A0B4J1V1 117 aa13.19□□□□□ -0.3
NUP88-210ENST00000574867 ANKRD34BA5PLL1 514 aa13.19□□□□□ -0.3
NUP88-210ENST00000574867 IGHV3-23P01764 117 aa13.19□□□□□ -0.3
NUP88-210ENST00000574867 MYCNOSP40205 109 aa13.19□□□□□ -0.3
NUP88-210ENST00000574867 BCAP31P51572 246 aa13.19□□□□□ -0.3
NUP88-210ENST00000574867 MFAP4P55083 255 aa13.19□□□□□ -0.3
NUP88-210ENST00000574867 CD69Q07108 199 aa13.19□□□□□ -0.3
NUP88-210ENST00000574867 FHL3Q13643 280 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms