RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 LPAR2Q9HBW0 351 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 GPR179Q6PRD1 2367 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 SMIM27A0A1W2PRY6 76 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 A0A1W2PS18 150 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 COX7A2P2O60397 106 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 DEFB108BQ8NET1 73 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 CACNG8Q8WXS5 425 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 PPP1R14DQ9NXH3 145 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 CDC42EP3Q9UKI2 254 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 SLC25A15Q9Y619 301 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 TET2Q6N021 2002 aaPredicted RBP8.8□□□□□ -1
CCDC40-207ENST00000572253 DLL1O00548 723 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 REG1AP05451 166 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 LINC00614P0C842 121 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 GLRXP35754 106 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 CD69Q07108 199 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 C1orf229Q6ZS94 237 aaPredicted RBP8.8□□□□□ -1
CCDC40-207ENST00000572253 OR1L4Q8NGR5 311 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 SLC25A33Q9BSK2 321 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 NBASA2RRP1 2371 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 TEX50A0A1B0GTY4 177 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 BPIFB3P59826 476 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 RASL11AQ6T310 242 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 DNAJC4Q9NNZ3 241 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 BET1LQ9NYM9 111 aa8.8□□□□□ -1
CCDC40-207ENST00000572253 DPRXA6NFQ7 191 aa8.79□□□□□ -1
CCDC40-207ENST00000572253 BMPR1BO00238 502 aa8.79□□□□□ -1
CCDC40-207ENST00000572253 FAM201AQ5SY85 155 aa8.79□□□□□ -1
CCDC40-207ENST00000572253 Q6ZN92 141 aa8.79□□□□□ -1
CCDC40-207ENST00000572253 MOB3BQ86TA1 216 aa8.79□□□□□ -1
CCDC40-207ENST00000572253 OR9G1Q8NH87 305 aa8.79□□□□□ -1
CCDC40-207ENST00000572253 TM4SF5O14894 197 aa8.79□□□□□ -1
CCDC40-207ENST00000572253 HSBP1O75506 76 aa8.79□□□□□ -1
CCDC40-207ENST00000572253 PRRX1P54821 245 aa8.79□□□□□ -1
CCDC40-207ENST00000572253 LOXL4Q96JB6 756 aa8.79□□□□□ -1
CCDC40-207ENST00000572253 hADV38S2A0JD32 116 aa8.79□□□□□ -1
CCDC40-207ENST00000572253 LHBP01229 141 aa8.79□□□□□ -1
CCDC40-207ENST00000572253 RNASE2P10153 161 aaKnown RBP8.79□□□□□ -1
CCDC40-207ENST00000572253 COMPP49747 757 aaPredicted RBP8.79□□□□□ -1
CCDC40-207ENST00000572253 TNFAIP6P98066 277 aaPredicted RBP8.79□□□□□ -1
CCDC40-207ENST00000572253 STUMQ69YW2 141 aa8.79□□□□□ -1
CCDC40-207ENST00000572253 ZNF439Q8NDP4 499 aa8.79□□□□□ -1
CCDC40-207ENST00000572253 ZNF503Q96F45 646 aa8.79□□□□□ -1
CCDC40-207ENST00000572253 MRPL27Q9P0M9 148 aaKnown RBP8.79□□□□□ -1
CCDC40-207ENST00000572253 AMMECR1Q9Y4X0 333 aaPredicted RBP8.79□□□□□ -1
CCDC40-207ENST00000572253 ICE1Q9Y2F5 2266 aa8.79□□□□□ -1
CCDC40-207ENST00000572253 A0A1W2PN81 502 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 SUB1P53999 127 aaKnown RBP eCLIP8.78□□□□□ -1
CCDC40-207ENST00000572253 MFAP2P55001 183 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 PMCHL1Q16048 86 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 FDCSPQ8NFU4 85 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 OSR1Q8TAX0 266 aaPredicted RBP8.78□□□□□ -1
CCDC40-207ENST00000572253 PAXXQ9BUH6 204 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 NKX6-3A6NJ46 265 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 C3orf79P0CE67 100 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 SAA1P0DJI8 122 aaPredicted RBP8.78□□□□□ -1
CCDC40-207ENST00000572253 C10orf113Q5VZT2 155 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 GRAMD2BQ96HH9 432 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 IGF2BP2-AS1Q96M15 143 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 HARBI1Q96MB7 349 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 ZNF714Q96N38 554 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 CCL13Q99616 98 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 RPUSD1Q9UJJ7 312 aaKnown RBP8.78□□□□□ -1
CCDC40-207ENST00000572253 NKX2-8O15522 239 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 CT45A6P0DMU7 189 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 CT45A5P0DMU8 189 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 CT45A7P0DMV0 189 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 TIMM23BQ5SRD1 257 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 UTF1Q5T230 341 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 RCHY1Q96PM5 261 aa8.78□□□□□ -1
CCDC40-207ENST00000572253 IGKV1OR2-108A0A075B7D4 117 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 GATA4P43694 442 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 RPL8P62917 257 aaKnown RBP8.77□□□□□ -1.01
CCDC40-207ENST00000572253 SLC25A48Q6ZT89 311 aaKnown RBP8.77□□□□□ -1.01
CCDC40-207ENST00000572253 NHLRC2Q8NBF2 726 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 FAM222BQ8WU58 562 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 GAL3ST2Q9H3Q3 398 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 SAP30LQ9HAJ7 183 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 IGLV2-8P01709 118 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 NPSP0C0P6 89 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 CHRNB4P30926 498 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 UBE2G1P62253 170 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 MSMPQ1L6U9 139 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 FAM162BQ5T6X4 162 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 C11orf42Q8N5U0 333 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 RBMXL3Q8N7X1 1067 aaKnown RBP8.77□□□□□ -1.01
CCDC40-207ENST00000572253 TSKUQ8WUA8 353 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 RND1Q92730 232 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 SSBP3Q9BWW4 388 aaPredicted RBP8.77□□□□□ -1.01
CCDC40-207ENST00000572253 ZNF430Q9H8G1 570 aaPredicted RBP8.77□□□□□ -1.01
CCDC40-207ENST00000572253 DCAF16Q9NXF7 216 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 CDX4O14627 284 aaPredicted RBP8.77□□□□□ -1.01
CCDC40-207ENST00000572253 IGKV1-16P04430 117 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 SP9P0CG40 484 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 HIST1H1EP10412 219 aaKnown RBP8.77□□□□□ -1.01
CCDC40-207ENST00000572253 SPRNQ5BIV9 151 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 FAM231DQ6ZW35 169 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 FAM19A2Q8N3H0 131 aa8.77□□□□□ -1.01
CCDC40-207ENST00000572253 WIPF2Q8TF74 440 aaPredicted RBP8.77□□□□□ -1.01
CCDC40-207ENST00000572253 GAFA1Q96PS6 74 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms