RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 TMEM241Q24JQ0 296 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 ASPHD1Q5U4P2 390 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 OR4C13Q8NGP0 309 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 SMDT1Q9H4I9 107 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 SDF2L1Q9HCN8 221 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 GAR1Q9NY12 217 aaKnown RBP8.03□□□□□ -1.12
VPS53-206ENST00000570359 GAB2Q9UQC2 676 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 WASHC3Q9Y3C0 194 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 FAM90A9PA6NNJ1 464 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 ITGB1BP1O14713 200 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 TRGC2P03986 189 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 GAMTQ14353 236 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 ANKRD39Q53RE8 183 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 NEIL1Q96FI4 390 aaPredicted RBP8.03□□□□□ -1.12
VPS53-206ENST00000570359 UHRF2Q96PU4 802 aa8.03□□□□□ -1.12
VPS53-206ENST00000570359 MOSP00540 346 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 WT1-ASQ06250 92 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 RAB31Q13636 194 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 BSXQ3C1V8 233 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 CENPVQ7Z7K6 275 aaPredicted RBP8.02□□□□□ -1.13
VPS53-206ENST00000570359 OR5AN1Q8NGI8 311 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 NCOR1P1Q9H4R4 102 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 GSX1Q9H4S2 264 aaPredicted RBP8.02□□□□□ -1.13
VPS53-206ENST00000570359 LPAR2Q9HBW0 351 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 YTHDF2Q9Y5A9 579 aaKnown RBP8.02□□□□□ -1.13
VPS53-206ENST00000570359 INSIG2Q9Y5U4 225 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 S4R3C0 116 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 FAM208BQ5VWN6 2430 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 TRAV5A0A0B4J249 113 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 A0A1W2PPQ1 181 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 A0A1W2PPR1 153 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 SEC14L6B5MCN3 397 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 C22orf46C9J442 243 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 TSTD3H0UI37 97 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 RNASE2P10153 161 aaKnown RBP8.02□□□□□ -1.13
VPS53-206ENST00000570359 AREGP15514 252 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 RAB4AP20338 218 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 GNLYP22749 145 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 PPOXP50336 477 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 DLX6P56179 175 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 RPL23P62829 140 aaKnown RBP8.02□□□□□ -1.13
VPS53-206ENST00000570359 ERHP84090 104 aaKnown RBP8.02□□□□□ -1.13
VPS53-206ENST00000570359 PSG5Q15238 335 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 RUSC1-AS1Q66K80 236 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 C11orf42Q8N5U0 333 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 ZNF114Q8NC26 417 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 OR8B3Q8NGG8 313 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 OR1L8Q8NGR8 309 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 OSR1Q8TAX0 266 aaPredicted RBP8.02□□□□□ -1.13
VPS53-206ENST00000570359 RPEQ96AT9 228 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 YPEL4Q96NS1 127 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 OR8B2Q96RD0 313 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 FBXL15Q9H469 300 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 MANBALQ9NQG1 85 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 NAT8Q9UHE5 227 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 ZFHX3Q15911 3703 aa8.02□□□□□ -1.13
VPS53-206ENST00000570359 IFITM10A6NMD0 228 aa8.01□□□□□ -1.13
VPS53-206ENST00000570359 TNFRSF13BO14836 293 aaPredicted RBP8.01□□□□□ -1.13
VPS53-206ENST00000570359 ZNF90Q03938 601 aa8.01□□□□□ -1.13
VPS53-206ENST00000570359 HES1Q14469 280 aa8.01□□□□□ -1.13
VPS53-206ENST00000570359 NPIPB3Q92617 1050 aa8.01□□□□□ -1.13
VPS53-206ENST00000570359 TMEM186Q96B77 213 aa8.01□□□□□ -1.13
VPS53-206ENST00000570359 LINC00574Q9H8X3 128 aa8.01□□□□□ -1.13
VPS53-206ENST00000570359 MRPL36Q9P0J6 103 aaKnown RBP8.01□□□□□ -1.13
VPS53-206ENST00000570359 ELOA3CA0A087WX78 387 aaPredicted RBP8.01□□□□□ -1.13
VPS53-206ENST00000570359 H7BYZ3 331 aa8.01□□□□□ -1.13
VPS53-206ENST00000570359 RD3LP0DJH9 198 aa8.01□□□□□ -1.13
VPS53-206ENST00000570359 FAM3BP58499 235 aaPredicted RBP8.01□□□□□ -1.13
VPS53-206ENST00000570359 MORN5Q5VZ52 161 aa8.01□□□□□ -1.13
VPS53-206ENST00000570359 FAM210BQ96KR6 192 aa8.01□□□□□ -1.13
VPS53-206ENST00000570359 P2RX4Q99571 388 aa8.01□□□□□ -1.13
VPS53-206ENST00000570359 FAM103A1Q9BTL3 118 aaKnown RBP8.01□□□□□ -1.13
VPS53-206ENST00000570359 RAB1BQ9H0U4 201 aa8.01□□□□□ -1.13
VPS53-206ENST00000570359 BET1LQ9NYM9 111 aa8.01□□□□□ -1.13
VPS53-206ENST00000570359 CBY1Q9Y3M2 126 aa8.01□□□□□ -1.13
VPS53-206ENST00000570359 A0A1W2PPI3 338 aa8□□□□□ -1.13
VPS53-206ENST00000570359 CGB1A6NKQ9 187 aa8□□□□□ -1.13
VPS53-206ENST00000570359 H3BTX0 84 aa8□□□□□ -1.13
VPS53-206ENST00000570359 CLDN34H7C241 214 aa8□□□□□ -1.13
VPS53-206ENST00000570359 GCHFRP30047 84 aa8□□□□□ -1.13
VPS53-206ENST00000570359 VMA21Q3ZAQ7 101 aa8□□□□□ -1.13
VPS53-206ENST00000570359 AARDQ4LEZ3 155 aa8□□□□□ -1.13
VPS53-206ENST00000570359 UNQ6494/PRO21346Q6UXR6 183 aa8□□□□□ -1.13
VPS53-206ENST00000570359 SLC35E1Q96K37 410 aa8□□□□□ -1.13
VPS53-206ENST00000570359 FNDC4Q9H6D8 234 aaPredicted RBP8□□□□□ -1.13
VPS53-206ENST00000570359 LSM4Q9Y4Z0 139 aaKnown RBP8□□□□□ -1.13
VPS53-206ENST00000570359 IGSF10Q6WRI0 2623 aa8□□□□□ -1.13
VPS53-206ENST00000570359 A0A087X0M5 115 aa8□□□□□ -1.13
VPS53-206ENST00000570359 A0A1B0GX30 115 aa8□□□□□ -1.13
VPS53-206ENST00000570359 TCAPO15273 167 aa8□□□□□ -1.13
VPS53-206ENST00000570359 MPDU1O75352 247 aa8□□□□□ -1.13
VPS53-206ENST00000570359 IGLV2-23P01705 113 aa8□□□□□ -1.13
VPS53-206ENST00000570359 OR5G3P0C626 314 aa8□□□□□ -1.13
VPS53-206ENST00000570359 USF1P22415 310 aaPredicted RBP8□□□□□ -1.13
VPS53-206ENST00000570359 RND2P52198 227 aa8□□□□□ -1.13
VPS53-206ENST00000570359 RHOBP62745 196 aa8□□□□□ -1.13
VPS53-206ENST00000570359 ZNF841Q6ZN19 808 aa8□□□□□ -1.13
VPS53-206ENST00000570359 PDPNQ86YL7 162 aa8□□□□□ -1.13
VPS53-206ENST00000570359 OR5B3Q8NH48 314 aa8□□□□□ -1.13
VPS53-206ENST00000570359 OR5R1Q8NH85 324 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms