RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 DYNC2LI1Q8TCX1 351 aa15.53■□□□□ 0.08
CLN3-219ENST00000565778 RRNAD1Q96FB5 475 aaKnown RBP15.53■□□□□ 0.08
CLN3-219ENST00000565778 TXN2Q99757 166 aa15.53■□□□□ 0.08
CLN3-219ENST00000565778 BCL7BQ9BQE9 202 aa15.53■□□□□ 0.08
CLN3-219ENST00000565778 PDCD10Q9BUL8 212 aa15.53■□□□□ 0.08
CLN3-219ENST00000565778 C14orf166Q9Y224 244 aaKnown RBP15.53■□□□□ 0.08
CLN3-219ENST00000565778 K7EMT4 169 aa15.52■□□□□ 0.08
CLN3-219ENST00000565778 NOL3O60936 208 aaKnown RBP15.52■□□□□ 0.08
CLN3-219ENST00000565778 YIF1AO95070 293 aa15.52■□□□□ 0.08
CLN3-219ENST00000565778 RELQ04864 619 aaPredicted RBP15.52■□□□□ 0.08
CLN3-219ENST00000565778 ZFAND6Q6FIF0 208 aa15.52■□□□□ 0.08
CLN3-219ENST00000565778 SLC35G3Q8N808 338 aa15.52■□□□□ 0.08
CLN3-219ENST00000565778 ZNF114Q8NC26 417 aa15.52■□□□□ 0.08
CLN3-219ENST00000565778 RNASE11Q8TAA1 199 aaKnown RBP15.52■□□□□ 0.08
CLN3-219ENST00000565778 SMIM4Q8WVI0 70 aa15.52■□□□□ 0.08
CLN3-219ENST00000565778 C6orf62Q9GZU0 229 aaPredicted RBP15.52■□□□□ 0.08
CLN3-219ENST00000565778 CCDC59Q9P031 241 aaKnown RBP15.52■□□□□ 0.08
CLN3-219ENST00000565778 RABL2AQ9UBK7 228 aaPredicted RBP15.52■□□□□ 0.08
CLN3-219ENST00000565778 RABL2BQ9UNT1 228 aa15.52■□□□□ 0.08
CLN3-219ENST00000565778 TEX13DA0A0J9YY54 714 aaPredicted RBP15.51■□□□□ 0.07
CLN3-219ENST00000565778 CTDSPLO15194 276 aa15.51■□□□□ 0.07
CLN3-219ENST00000565778 ST8SIA3O43173 380 aa15.51■□□□□ 0.07
CLN3-219ENST00000565778 B3GALNT1O75752 331 aa15.51■□□□□ 0.07
CLN3-219ENST00000565778 AKAIN1P0CW23 69 aa15.51■□□□□ 0.07
CLN3-219ENST00000565778 ETV6P41212 452 aa15.51■□□□□ 0.07
CLN3-219ENST00000565778 RPL5P46777 297 aaKnown RBP15.51■□□□□ 0.07
CLN3-219ENST00000565778 FAM110AQ9BQ89 295 aa15.51■□□□□ 0.07
CLN3-219ENST00000565778 C15orf62A8K5M9 175 aa15.5■□□□□ 0.07
CLN3-219ENST00000565778 GNG7O60262 68 aa15.5■□□□□ 0.07
CLN3-219ENST00000565778 P0C879 139 aa15.5■□□□□ 0.07
CLN3-219ENST00000565778 UCP1P25874 307 aa15.5■□□□□ 0.07
CLN3-219ENST00000565778 SPAG8Q99932 426 aaPredicted RBP15.5■□□□□ 0.07
CLN3-219ENST00000565778 RTBDNQ9BSG5 229 aaPredicted RBP15.5■□□□□ 0.07
CLN3-219ENST00000565778 ENY2Q9NPA8 101 aa15.5■□□□□ 0.07
CLN3-219ENST00000565778 TSPAN4O14817 238 aa15.49■□□□□ 0.07
CLN3-219ENST00000565778 FCGR2BP31994 310 aaPredicted RBP15.49■□□□□ 0.07
CLN3-219ENST00000565778 SUB1P53999 127 aaKnown RBP eCLIP15.49■□□□□ 0.07
CLN3-219ENST00000565778 SMPXQ9UHP9 88 aa15.49■□□□□ 0.07
CLN3-219ENST00000565778 LOC102724200A0A096LPH7 203 aaPredicted RBP15.48■□□□□ 0.07
CLN3-219ENST00000565778 OR5AC1P0C628 307 aa15.48■□□□□ 0.07
CLN3-219ENST00000565778 NPBWR1P48145 328 aa15.48■□□□□ 0.07
CLN3-219ENST00000565778 HOXA1P49639 335 aaPredicted RBP15.48■□□□□ 0.07
CLN3-219ENST00000565778 SURF2Q15527 256 aaPredicted RBP15.48■□□□□ 0.07
CLN3-219ENST00000565778 DUSP18Q8NEJ0 188 aa15.48■□□□□ 0.07
CLN3-219ENST00000565778 OR4C16Q8NGL9 310 aa15.48■□□□□ 0.07
CLN3-219ENST00000565778 GGTLC1Q9BX51 225 aa15.48■□□□□ 0.07
CLN3-219ENST00000565778 NXF2Q9GZY0 626 aaKnown RBP15.48■□□□□ 0.07
CLN3-219ENST00000565778 TMEM222Q9H0R3 208 aa15.48■□□□□ 0.07
CLN3-219ENST00000565778 RSL24D1Q9UHA3 163 aaKnown RBP15.48■□□□□ 0.07
CLN3-219ENST00000565778 UBQLN2Q9UHD9 624 aa15.48■□□□□ 0.07
CLN3-219ENST00000565778 GPR132Q9UNW8 380 aa15.48■□□□□ 0.07
CLN3-219ENST00000565778 A0A0G2JRQ6 117 aa15.47■□□□□ 0.07
CLN3-219ENST00000565778 INS-IGF2F8WCM5 200 aa15.47■□□□□ 0.07
CLN3-219ENST00000565778 CDS2O95674 445 aa15.47■□□□□ 0.07
CLN3-219ENST00000565778 DHODHQ02127 395 aa15.47■□□□□ 0.07
CLN3-219ENST00000565778 TMEM116Q8NCL8 245 aa15.47■□□□□ 0.07
CLN3-219ENST00000565778 OR51S1Q8NGJ8 323 aa15.47■□□□□ 0.07
CLN3-219ENST00000565778 GLYATL2Q8WU03 294 aa15.47■□□□□ 0.07
CLN3-219ENST00000565778 PRRT1Q99946 306 aa15.47■□□□□ 0.07
CLN3-219ENST00000565778 NAA60Q9H7X0 242 aa15.47■□□□□ 0.07
CLN3-219ENST00000565778 IGHV3-49A0A0A0MS15 119 aa15.46■□□□□ 0.07
CLN3-219ENST00000565778 TRAV14DV4A0A0A6YYC5 116 aa15.46■□□□□ 0.07
CLN3-219ENST00000565778 IGHV7-4-1A0A0J9YVY3 117 aa15.46■□□□□ 0.07
CLN3-219ENST00000565778 FABP12A6NFH5 140 aa15.46■□□□□ 0.07
CLN3-219ENST00000565778 H3BMQ9 156 aa15.46■□□□□ 0.07
CLN3-219ENST00000565778 GSTZ1O43708 216 aaPredicted RBP15.46■□□□□ 0.07
CLN3-219ENST00000565778 TNFSF8P32971 234 aa15.46■□□□□ 0.07
CLN3-219ENST00000565778 Q6ZRM9 215 aa15.46■□□□□ 0.07
CLN3-219ENST00000565778 FAM219AQ8IW50 185 aa15.46■□□□□ 0.07
CLN3-219ENST00000565778 MCFD2Q8NI22 146 aa15.46■□□□□ 0.07
CLN3-219ENST00000565778 RHPN1-AS1Q9BWJ2 59 aa15.46■□□□□ 0.07
CLN3-219ENST00000565778 SLIRPQ9GZT3 109 aaKnown RBP15.46■□□□□ 0.07
CLN3-219ENST00000565778 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.46■□□□□ 0.07
CLN3-219ENST00000565778 ANKRD20A5PA0PJZ0 165 aa15.45■□□□□ 0.06
CLN3-219ENST00000565778 OR4C46A6NHA9 309 aa15.45■□□□□ 0.06
CLN3-219ENST00000565778 CORTO00230 105 aa15.45■□□□□ 0.06
CLN3-219ENST00000565778 CHEK1O14757 476 aa15.45■□□□□ 0.06
CLN3-219ENST00000565778 RNASE2P10153 161 aaKnown RBP15.45■□□□□ 0.06
CLN3-219ENST00000565778 SELENOHQ8IZQ5 122 aaKnown RBP15.45■□□□□ 0.06
CLN3-219ENST00000565778 RBPMSQ93062 196 aaKnown RBP15.45■□□□□ 0.06
CLN3-219ENST00000565778 OR10C1Q96KK4 312 aa15.45■□□□□ 0.06
CLN3-219ENST00000565778 RNF2Q99496 336 aa15.45■□□□□ 0.06
CLN3-219ENST00000565778 SCP2D1Q9UJQ7 156 aa15.45■□□□□ 0.06
CLN3-219ENST00000565778 KCNIP3Q9Y2W7 256 aa15.45■□□□□ 0.06
CLN3-219ENST00000565778 TMEM50AO95807 157 aa15.44■□□□□ 0.06
CLN3-219ENST00000565778 SPCS3P61009 180 aa15.44■□□□□ 0.06
CLN3-219ENST00000565778 LHFPL5Q8TAF8 219 aa15.44■□□□□ 0.06
CLN3-219ENST00000565778 GPR146Q96CH1 333 aa15.44■□□□□ 0.06
CLN3-219ENST00000565778 ZNF414Q96IQ9 312 aa15.44■□□□□ 0.06
CLN3-219ENST00000565778 MCUBQ9NWR8 336 aa15.44■□□□□ 0.06
CLN3-219ENST00000565778 DNAH7Q8WXX0 4024 aa15.44■□□□□ 0.06
CLN3-219ENST00000565778 IGHV3OR16-13A0A075B7E8 117 aa15.43■□□□□ 0.06
CLN3-219ENST00000565778 IGHV3-74A0A0B4J1X5 117 aa15.43■□□□□ 0.06
CLN3-219ENST00000565778 CRYM-AS1A6NIL9 109 aa15.43■□□□□ 0.06
CLN3-219ENST00000565778 MLANAQ16655 118 aa15.43■□□□□ 0.06
CLN3-219ENST00000565778 TMEM268Q5VZI3 342 aa15.43■□□□□ 0.06
CLN3-219ENST00000565778 TOMM20LQ6UXN7 152 aa15.43■□□□□ 0.06
CLN3-219ENST00000565778 IL17DQ8TAD2 202 aa15.43■□□□□ 0.06
CLN3-219ENST00000565778 SCGB3A2Q96PL1 93 aa15.43■□□□□ 0.06
CLN3-219ENST00000565778 SOSTQ9BQB4 213 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms