RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 RPL29P47914 159 aaKnown RBP11□□□□□ -0.65
CLK3-215ENST00000564353 KIAA1644Q3SXP7 199 aa11□□□□□ -0.65
CLK3-215ENST00000564353 CISD2Q8N5K1 135 aaKnown RBP11□□□□□ -0.65
CLK3-215ENST00000564353 IRF2P14316 349 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 RAB7AP51149 207 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 ERVFC1-1P60608 527 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 TEX38Q6PEX7 206 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 LYPD2Q6UXB3 125 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 OR10G8Q8NGN5 311 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 NEUROG1Q92886 237 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 NABP2Q9BQ15 211 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 DNAJC4Q9NNZ3 241 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 ELOVL5Q9NYP7 299 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 TEX50A0A1B0GTY4 177 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 SRP14P37108 136 aaKnown RBP10.99□□□□□ -0.65
CLK3-215ENST00000564353 CDKN1BP46527 198 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 IER3P46695 156 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 RHOBP62745 196 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 JOSD1Q15040 202 aaPredicted RBP10.99□□□□□ -0.65
CLK3-215ENST00000564353 PQLC2Q6ZP29 291 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 IGLV3-9A0A075B6K5 115 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 MGST1P10620 155 aaKnown RBP10.99□□□□□ -0.65
CLK3-215ENST00000564353 SUMO1P63165 101 aaKnown RBP10.99□□□□□ -0.65
CLK3-215ENST00000564353 OR52E5Q8NH55 327 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 OR5R1Q8NH85 324 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 HARBI1Q96MB7 349 aa10.99□□□□□ -0.65
CLK3-215ENST00000564353 SLC25A10Q9UBX3 287 aaPredicted RBP10.99□□□□□ -0.65
CLK3-215ENST00000564353 DYSFO75923 2080 aa10.98□□□□□ -0.65
CLK3-215ENST00000564353 MPDU1O75352 247 aa10.98□□□□□ -0.65
CLK3-215ENST00000564353 LINC00869P0C866 280 aa10.98□□□□□ -0.65
CLK3-215ENST00000564353 RPL15P61313 204 aaKnown RBP10.98□□□□□ -0.65
CLK3-215ENST00000564353 OR8I2Q8N0Y5 310 aa10.98□□□□□ -0.65
CLK3-215ENST00000564353 ZNF439Q8NDP4 499 aa10.98□□□□□ -0.65
CLK3-215ENST00000564353 IGFBPL1Q8WX77 278 aa10.98□□□□□ -0.65
CLK3-215ENST00000564353 RITA1Q96K30 269 aa10.98□□□□□ -0.65
CLK3-215ENST00000564353 FOXA2Q9Y261 457 aaPredicted RBP10.98□□□□□ -0.65
CLK3-215ENST00000564353 TMEM238C9JI98 176 aa10.98□□□□□ -0.65
CLK3-215ENST00000564353 BSPH1Q075Z2 132 aa10.98□□□□□ -0.65
CLK3-215ENST00000564353 CR1LQ2VPA4 569 aa10.98□□□□□ -0.65
CLK3-215ENST00000564353 PRR30Q53SZ7 412 aaPredicted RBP10.98□□□□□ -0.65
CLK3-215ENST00000564353 RAB1CQ92928 201 aa10.98□□□□□ -0.65
CLK3-215ENST00000564353 CFHR2P36980 270 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 RAB31Q13636 194 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 KRTCAP3Q53RY4 240 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 CENPWQ5EE01 88 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 ZNF788Q6ZQV5 615 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 NUDT10Q8NFP7 164 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 ZNF503Q96F45 646 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 TPSG1Q9NRR2 321 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 SERTAD4Q9NUC0 356 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 IL19Q9UHD0 177 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 TLN1Q9Y490 2541 aaKnown RBP10.97□□□□□ -0.65
CLK3-215ENST00000564353 A0A0G2JNJ9 132 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 DPRXA6NFQ7 191 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 PYYP10082 97 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 TFPI2P48307 235 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 RUSC1-AS1Q66K80 236 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 LPAR2Q9HBW0 351 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 TUBG2Q9NRH3 451 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 Q9UFV3 132 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 RALYQ9UKM9 306 aaKnown RBP10.97□□□□□ -0.65
CLK3-215ENST00000564353 COL12A1Q99715 3063 aa10.97□□□□□ -0.65
CLK3-215ENST00000564353 LYNX1G3V0Z9 82 aa10.96□□□□□ -0.65
CLK3-215ENST00000564353 H3BTX0 84 aa10.96□□□□□ -0.65
CLK3-215ENST00000564353 UPK2O00526 184 aa10.96□□□□□ -0.65
CLK3-215ENST00000564353 ENSAO43768 121 aaKnown RBP10.96□□□□□ -0.65
CLK3-215ENST00000564353 LYNX1P0DP58 116 aa10.96□□□□□ -0.65
CLK3-215ENST00000564353 DNLZQ5SXM8 178 aa10.96□□□□□ -0.65
CLK3-215ENST00000564353 TMEM144Q7Z5S9 345 aa10.96□□□□□ -0.65
CLK3-215ENST00000564353 TMEM18Q96B42 140 aa10.96□□□□□ -0.65
CLK3-215ENST00000564353 FAM103A1Q9BTL3 118 aaKnown RBP10.96□□□□□ -0.65
CLK3-215ENST00000564353 SSBP3Q9BWW4 388 aaPredicted RBP10.96□□□□□ -0.65
CLK3-215ENST00000564353 RPUSD1Q9UJJ7 312 aaKnown RBP10.96□□□□□ -0.65
CLK3-215ENST00000564353 TRAV34A0A0B4J273 112 aa10.96□□□□□ -0.66
CLK3-215ENST00000564353 TRGV8A0A0C4DH27 118 aa10.96□□□□□ -0.66
CLK3-215ENST00000564353 TNFSF4P23510 183 aa10.96□□□□□ -0.66
CLK3-215ENST00000564353 TMPRSS3P57727 454 aa10.96□□□□□ -0.66
CLK3-215ENST00000564353 PAX5Q02548 391 aa10.96□□□□□ -0.66
CLK3-215ENST00000564353 RTL8BQ17RB0 113 aa10.96□□□□□ -0.66
CLK3-215ENST00000564353 OR10X1Q8NGY0 326 aa10.96□□□□□ -0.66
CLK3-215ENST00000564353 TANC2Q9HCD6 1990 aa10.96□□□□□ -0.66
CLK3-215ENST00000564353 ABCA4P78363 2273 aa10.95□□□□□ -0.66
CLK3-215ENST00000564353 ZNF705FA8MVS1 300 aaPredicted RBP10.95□□□□□ -0.66
CLK3-215ENST00000564353 GGTLC3B5MD39 225 aa10.95□□□□□ -0.66
CLK3-215ENST00000564353 FCN1O00602 326 aa10.95□□□□□ -0.66
CLK3-215ENST00000564353 ZNF705DP0CH99 300 aaPredicted RBP10.95□□□□□ -0.66
CLK3-215ENST00000564353 ZNF705BP0CI00 300 aaPredicted RBP10.95□□□□□ -0.66
CLK3-215ENST00000564353 KIR2DS2P43631 304 aa10.95□□□□□ -0.66
CLK3-215ENST00000564353 PRR20EP86478 221 aa10.95□□□□□ -0.66
CLK3-215ENST00000564353 PRR20CP86479 221 aa10.95□□□□□ -0.66
CLK3-215ENST00000564353 PRR20DP86480 221 aa10.95□□□□□ -0.66
CLK3-215ENST00000564353 PRR20BP86481 221 aa10.95□□□□□ -0.66
CLK3-215ENST00000564353 PRR20AP86496 221 aa10.95□□□□□ -0.66
CLK3-215ENST00000564353 ADIPOQQ15848 244 aa10.95□□□□□ -0.66
CLK3-215ENST00000564353 TDRG1Q3Y452 100 aa10.95□□□□□ -0.66
CLK3-215ENST00000564353 TMEM200BQ69YZ2 307 aa10.95□□□□□ -0.66
CLK3-215ENST00000564353 HCP5Q6MZN7 132 aa10.95□□□□□ -0.66
CLK3-215ENST00000564353 MRPL54Q6P161 138 aaKnown RBP10.95□□□□□ -0.66
CLK3-215ENST00000564353 ZNF705AQ6ZN79 300 aaPredicted RBP10.95□□□□□ -0.66
CLK3-215ENST00000564353 Q6ZS92 163 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms