RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 SSBP3Q9BWW4 388 aaPredicted RBP10.8□□□□□ -0.68
CLN3-210ENST00000563874 NRN1Q9NPD7 142 aa10.8□□□□□ -0.68
CLN3-210ENST00000563874 EP300Q09472 2414 aaPredicted RBP10.8□□□□□ -0.68
CLN3-210ENST00000563874 C19orf67A6NJJ6 358 aa10.8□□□□□ -0.68
CLN3-210ENST00000563874 SRRM4A7MD48 611 aaKnown RBP10.8□□□□□ -0.68
CLN3-210ENST00000563874 BRS3P32247 399 aa10.8□□□□□ -0.68
CLN3-210ENST00000563874 KIR2DS2P43631 304 aa10.8□□□□□ -0.68
CLN3-210ENST00000563874 CX3CL1P78423 397 aa10.8□□□□□ -0.68
CLN3-210ENST00000563874 TMEM136Q6ZRR5 245 aa10.8□□□□□ -0.68
CLN3-210ENST00000563874 OR10W1Q8NGF6 305 aa10.8□□□□□ -0.68
CLN3-210ENST00000563874 ITLN1Q8WWA0 313 aa10.8□□□□□ -0.68
CLN3-210ENST00000563874 RND1Q92730 232 aa10.8□□□□□ -0.68
CLN3-210ENST00000563874 ZNF586Q9NXT0 402 aa10.8□□□□□ -0.68
CLN3-210ENST00000563874 TRAV5A0A0B4J249 113 aa10.79□□□□□ -0.68
CLN3-210ENST00000563874 CDX4O14627 284 aaPredicted RBP10.79□□□□□ -0.68
CLN3-210ENST00000563874 IGLV1-44P01699 117 aa10.79□□□□□ -0.68
CLN3-210ENST00000563874 MORN5Q5VZ52 161 aa10.79□□□□□ -0.68
CLN3-210ENST00000563874 M0QZK8 103 aa10.79□□□□□ -0.68
CLN3-210ENST00000563874 M0R1B8 84 aa10.79□□□□□ -0.68
CLN3-210ENST00000563874 DLEU1O43261 78 aa10.79□□□□□ -0.68
CLN3-210ENST00000563874 RAB7AP51149 207 aa10.79□□□□□ -0.68
CLN3-210ENST00000563874 FAM168AQ92567 244 aa10.79□□□□□ -0.68
CLN3-210ENST00000563874 TNFRSF14Q92956 283 aa10.79□□□□□ -0.68
CLN3-210ENST00000563874 LPAR2Q9HBW0 351 aa10.79□□□□□ -0.68
CLN3-210ENST00000563874 TMEM167BQ9NRX6 74 aa10.79□□□□□ -0.68
CLN3-210ENST00000563874 TECRQ9NZ01 308 aaKnown RBP10.79□□□□□ -0.68
CLN3-210ENST00000563874 LY96Q9Y6Y9 160 aa10.79□□□□□ -0.68
CLN3-210ENST00000563874 A0A1W2PS18 150 aa10.78□□□□□ -0.68
CLN3-210ENST00000563874 IGHV3-48P01763 117 aa10.78□□□□□ -0.68
CLN3-210ENST00000563874 NTF3P20783 257 aa10.78□□□□□ -0.68
CLN3-210ENST00000563874 CR1LQ2VPA4 569 aa10.78□□□□□ -0.68
CLN3-210ENST00000563874 IBA57Q5T440 356 aaKnown RBP10.78□□□□□ -0.68
CLN3-210ENST00000563874 ATOH7Q8N100 152 aa10.78□□□□□ -0.68
CLN3-210ENST00000563874 Q8N976 141 aa10.78□□□□□ -0.68
CLN3-210ENST00000563874 WNT10AQ9GZT5 417 aa10.78□□□□□ -0.68
CLN3-210ENST00000563874 CNOT1A5YKK6 2376 aaKnown RBP10.78□□□□□ -0.68
CLN3-210ENST00000563874 KBTBD11-OT1A0A1B0GTJ5 212 aa10.78□□□□□ -0.68
CLN3-210ENST00000563874 IGHG3P01860 377 aa10.78□□□□□ -0.68
CLN3-210ENST00000563874 CGB3P0DN86 165 aa10.78□□□□□ -0.68
CLN3-210ENST00000563874 CGB7P0DN87 165 aa10.78□□□□□ -0.68
CLN3-210ENST00000563874 ZNF71Q9NQZ8 489 aaPredicted RBP10.78□□□□□ -0.68
CLN3-210ENST00000563874 BMPR1BO00238 502 aa10.78□□□□□ -0.68
CLN3-210ENST00000563874 ITGB1BP1O14713 200 aa10.78□□□□□ -0.68
CLN3-210ENST00000563874 IGLV2-8P01709 118 aa10.78□□□□□ -0.68
CLN3-210ENST00000563874 MMDQ15546 238 aa10.78□□□□□ -0.68
CLN3-210ENST00000563874 BHLHA15Q7RTS1 189 aaPredicted RBP10.78□□□□□ -0.68
CLN3-210ENST00000563874 NAV3Q8IVL0 2385 aa10.77□□□□□ -0.68
CLN3-210ENST00000563874 C22orf46C9J442 243 aa10.77□□□□□ -0.68
CLN3-210ENST00000563874 TMEM238C9JI98 176 aa10.77□□□□□ -0.68
CLN3-210ENST00000563874 MZT1Q08AG7 82 aa10.77□□□□□ -0.68
CLN3-210ENST00000563874 SPATA45Q537H7 98 aa10.77□□□□□ -0.68
CLN3-210ENST00000563874 FAM216BQ8N7L0 139 aa10.77□□□□□ -0.68
CLN3-210ENST00000563874 C1orf162Q8NEQ5 155 aaPredicted RBP10.77□□□□□ -0.68
CLN3-210ENST00000563874 CORO2AQ92828 525 aa10.77□□□□□ -0.68
CLN3-210ENST00000563874 STARD4Q96DR4 205 aa10.77□□□□□ -0.68
CLN3-210ENST00000563874 CCL13Q99616 98 aa10.77□□□□□ -0.68
CLN3-210ENST00000563874 SLC25A10Q9UBX3 287 aaPredicted RBP10.77□□□□□ -0.68
CLN3-210ENST00000563874 TRBV9A0A0B4J1U6 114 aa10.77□□□□□ -0.69
CLN3-210ENST00000563874 TRAV34A0A0B4J273 112 aa10.77□□□□□ -0.69
CLN3-210ENST00000563874 OR2T6Q8NHC8 308 aa10.77□□□□□ -0.69
CLN3-210ENST00000563874 KCNS1Q96KK3 526 aa10.77□□□□□ -0.69
CLN3-210ENST00000563874 CDC42EP3Q9UKI2 254 aa10.77□□□□□ -0.69
CLN3-210ENST00000563874 PROCRQ9UNN8 238 aa10.77□□□□□ -0.69
CLN3-210ENST00000563874 TEX50A0A1B0GTY4 177 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 PRR33A8MZF0 331 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 LINC00614P0C842 121 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 PRCDQ00LT1 54 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 RNF2Q99496 336 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 OSTCQ9NRP0 149 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 PRNDQ9UKY0 176 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 CT45A6P0DMU7 189 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 CT45A5P0DMU8 189 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 CT45A7P0DMV0 189 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 SSBP2P81877 361 aaPredicted RBP10.76□□□□□ -0.69
CLN3-210ENST00000563874 SLAQ13239 276 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 PLSCR4Q9NRQ2 329 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 SLC35D1Q9NTN3 355 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 SLC25A15Q9Y619 301 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 MGAQ8IWI9 3026 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 CBY3A6NI87 242 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 UPK2O00526 184 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 SLC25A17O43808 307 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 MT-ND6P03923 174 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 PYYP10082 97 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 WT1P19544 449 aaPredicted RBP10.76□□□□□ -0.69
CLN3-210ENST00000563874 KLF3P57682 345 aaPredicted RBP10.76□□□□□ -0.69
CLN3-210ENST00000563874 UBE2L3P68036 154 aaKnown RBP10.76□□□□□ -0.69
CLN3-210ENST00000563874 ZNF355PQ9NSJ1 428 aa10.76□□□□□ -0.69
CLN3-210ENST00000563874 ISLRO14498 428 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 ZNF324O75467 553 aaPredicted RBP10.75□□□□□ -0.69
CLN3-210ENST00000563874 CRYABP02511 175 aaKnown RBP10.75□□□□□ -0.69
CLN3-210ENST00000563874 AMY1AP04745 511 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 C3orf79P0CE67 100 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 SAA1P0DJI8 122 aaPredicted RBP10.75□□□□□ -0.69
CLN3-210ENST00000563874 USF1P22415 310 aaPredicted RBP10.75□□□□□ -0.69
CLN3-210ENST00000563874 LCN12Q6JVE5 192 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 PRR27Q6MZM9 219 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 C1orf174Q8IYL3 243 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 OR4B1Q8NGF8 309 aa10.75□□□□□ -0.69
CLN3-210ENST00000563874 RNASE8Q8TDE3 154 aaKnown RBP10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms