RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 MT-CO2P00403 227 aa12.63□□□□□ -0.39
CLK3-210ENST00000563112 IFNA17P01571 189 aa12.63□□□□□ -0.39
CLK3-210ENST00000563112 IGKV1-5P01602 117 aa12.63□□□□□ -0.39
CLK3-210ENST00000563112 CTSGP08311 255 aa12.63□□□□□ -0.39
CLK3-210ENST00000563112 RBMY1DP0C7P1 496 aaKnown RBP12.63□□□□□ -0.39
CLK3-210ENST00000563112 FCGR2BP31994 310 aaPredicted RBP12.63□□□□□ -0.39
CLK3-210ENST00000563112 ADMP35318 185 aa12.63□□□□□ -0.39
CLK3-210ENST00000563112 RPL5P46777 297 aaKnown RBP12.63□□□□□ -0.39
CLK3-210ENST00000563112 IZUMO4Q1ZYL8 232 aa12.63□□□□□ -0.39
CLK3-210ENST00000563112 SP6Q3SY56 376 aa12.63□□□□□ -0.39
CLK3-210ENST00000563112 DYNC2LI1Q8TCX1 351 aa12.63□□□□□ -0.39
CLK3-210ENST00000563112 PINX1Q96BK5 328 aaKnown RBP12.63□□□□□ -0.39
CLK3-210ENST00000563112 C6orf62Q9GZU0 229 aaPredicted RBP12.63□□□□□ -0.39
CLK3-210ENST00000563112 HIPK2Q9H2X6 1198 aa12.63□□□□□ -0.39
CLK3-210ENST00000563112 TEX13DA0A0J9YY54 714 aaPredicted RBP12.62□□□□□ -0.39
CLK3-210ENST00000563112 F8W735 103 aaPredicted RBP12.62□□□□□ -0.39
CLK3-210ENST00000563112 I3L2K1 104 aa12.62□□□□□ -0.39
CLK3-210ENST00000563112 CTDSPLO15194 276 aa12.62□□□□□ -0.39
CLK3-210ENST00000563112 AKAIN1P0CW23 69 aa12.62□□□□□ -0.39
CLK3-210ENST00000563112 UCP1P25874 307 aa12.62□□□□□ -0.39
CLK3-210ENST00000563112 SUB1P53999 127 aaKnown RBP eCLIP12.62□□□□□ -0.39
CLK3-210ENST00000563112 SURF2Q15527 256 aaPredicted RBP12.62□□□□□ -0.39
CLK3-210ENST00000563112 SPINK9Q5DT21 86 aa12.62□□□□□ -0.39
CLK3-210ENST00000563112 SPAG8Q99932 426 aaPredicted RBP12.62□□□□□ -0.39
CLK3-210ENST00000563112 ENY2Q9NPA8 101 aa12.62□□□□□ -0.39
CLK3-210ENST00000563112 RSL24D1Q9UHA3 163 aaKnown RBP12.62□□□□□ -0.39
CLK3-210ENST00000563112 RYR3Q15413 4870 aa12.61□□□□□ -0.39
CLK3-210ENST00000563112 A0A0B4J293 547 aa12.61□□□□□ -0.39
CLK3-210ENST00000563112 C15orf62A8K5M9 175 aa12.61□□□□□ -0.39
CLK3-210ENST00000563112 TSPAN4O14817 238 aa12.61□□□□□ -0.39
CLK3-210ENST00000563112 ST8SIA3O43173 380 aa12.61□□□□□ -0.39
CLK3-210ENST00000563112 GNG7O60262 68 aa12.61□□□□□ -0.39
CLK3-210ENST00000563112 YIF1AO95070 293 aa12.61□□□□□ -0.39
CLK3-210ENST00000563112 P0C879 139 aa12.61□□□□□ -0.39
CLK3-210ENST00000563112 PRRT1Q99946 306 aa12.61□□□□□ -0.39
CLK3-210ENST00000563112 IGHV3OR16-8A0A075B7F1 116 aa12.6□□□□□ -0.39
CLK3-210ENST00000563112 LOC102724200A0A096LPH7 203 aaPredicted RBP12.6□□□□□ -0.39
CLK3-210ENST00000563112 A6NHS1 94 aa12.6□□□□□ -0.39
CLK3-210ENST00000563112 INS-IGF2F8WCM5 200 aa12.6□□□□□ -0.39
CLK3-210ENST00000563112 ZNF207O43670 478 aaKnown RBP12.6□□□□□ -0.39
CLK3-210ENST00000563112 NPBWR1P48145 328 aa12.6□□□□□ -0.39
CLK3-210ENST00000563112 HOXA1P49639 335 aaPredicted RBP12.6□□□□□ -0.39
CLK3-210ENST00000563112 DHODHQ02127 395 aa12.6□□□□□ -0.39
CLK3-210ENST00000563112 FAAP20Q6NZ36 180 aa12.6□□□□□ -0.39
CLK3-210ENST00000563112 FAM219AQ8IW50 185 aa12.6□□□□□ -0.39
CLK3-210ENST00000563112 DUSP18Q8NEJ0 188 aa12.6□□□□□ -0.39
CLK3-210ENST00000563112 OR4C16Q8NGL9 310 aa12.6□□□□□ -0.39
CLK3-210ENST00000563112 GGTLC1Q9BX51 225 aa12.6□□□□□ -0.39
CLK3-210ENST00000563112 TMEM222Q9H0R3 208 aa12.6□□□□□ -0.39
CLK3-210ENST00000563112 RETNQ9HD89 108 aa12.6□□□□□ -0.39
CLK3-210ENST00000563112 OR4C46A6NHA9 309 aa12.59□□□□□ -0.39
CLK3-210ENST00000563112 CORTO00230 105 aa12.59□□□□□ -0.39
CLK3-210ENST00000563112 IGHV3-48P01763 117 aa12.59□□□□□ -0.39
CLK3-210ENST00000563112 ETV6P41212 452 aa12.59□□□□□ -0.39
CLK3-210ENST00000563112 ZFAND6Q6FIF0 208 aa12.59□□□□□ -0.39
CLK3-210ENST00000563112 IL17DQ8TAD2 202 aa12.59□□□□□ -0.39
CLK3-210ENST00000563112 FAM110AQ9BQ89 295 aa12.59□□□□□ -0.39
CLK3-210ENST00000563112 RTBDNQ9BSG5 229 aaPredicted RBP12.59□□□□□ -0.39
CLK3-210ENST00000563112 NXF2Q9GZY0 626 aaKnown RBP12.59□□□□□ -0.39
CLK3-210ENST00000563112 NAA60Q9H7X0 242 aa12.59□□□□□ -0.39
CLK3-210ENST00000563112 SMPXQ9UHP9 88 aa12.59□□□□□ -0.39
CLK3-210ENST00000563112 GSTZ1O43708 216 aaPredicted RBP12.58□□□□□ -0.4
CLK3-210ENST00000563112 CDS2O95674 445 aa12.58□□□□□ -0.4
CLK3-210ENST00000563112 OR5AC1P0C628 307 aa12.58□□□□□ -0.4
CLK3-210ENST00000563112 TMEM116Q8NCL8 245 aa12.58□□□□□ -0.4
CLK3-210ENST00000563112 RBPMSQ93062 196 aaKnown RBP12.58□□□□□ -0.4
CLK3-210ENST00000563112 SCGB3A2Q96PL1 93 aa12.58□□□□□ -0.4
CLK3-210ENST00000563112 GINS3Q9BRX5 216 aa12.58□□□□□ -0.4
CLK3-210ENST00000563112 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.58□□□□□ -0.4
CLK3-210ENST00000563112 SCP2D1Q9UJQ7 156 aa12.58□□□□□ -0.4
CLK3-210ENST00000563112 GPR132Q9UNW8 380 aa12.58□□□□□ -0.4
CLK3-210ENST00000563112 TENM2Q9NT68 2774 aa12.58□□□□□ -0.4
CLK3-210ENST00000563112 TRAV14DV4A0A0A6YYC5 116 aa12.57□□□□□ -0.4
CLK3-210ENST00000563112 IGHV7-4-1A0A0J9YVY3 117 aa12.57□□□□□ -0.4
CLK3-210ENST00000563112 ANKRD20A5PA0PJZ0 165 aa12.57□□□□□ -0.4
CLK3-210ENST00000563112 FABP12A6NFH5 140 aa12.57□□□□□ -0.4
CLK3-210ENST00000563112 H3BMQ9 156 aa12.57□□□□□ -0.4
CLK3-210ENST00000563112 BMI1P35226 326 aa12.57□□□□□ -0.4
CLK3-210ENST00000563112 SPCS3P61009 180 aa12.57□□□□□ -0.4
CLK3-210ENST00000563112 OR51S1Q8NGJ8 323 aa12.57□□□□□ -0.4
CLK3-210ENST00000563112 MCFD2Q8NI22 146 aa12.57□□□□□ -0.4
CLK3-210ENST00000563112 GLYATL2Q8WU03 294 aa12.57□□□□□ -0.4
CLK3-210ENST00000563112 OR10C1Q96KK4 312 aa12.57□□□□□ -0.4
CLK3-210ENST00000563112 RHPN1-AS1Q9BWJ2 59 aa12.57□□□□□ -0.4
CLK3-210ENST00000563112 SLIRPQ9GZT3 109 aaKnown RBP12.57□□□□□ -0.4
CLK3-210ENST00000563112 KCNIP3Q9Y2W7 256 aa12.57□□□□□ -0.4
CLK3-210ENST00000563112 A0A0G2JRQ6 117 aa12.56□□□□□ -0.4
CLK3-210ENST00000563112 CRYM-AS1A6NIL9 109 aa12.56□□□□□ -0.4
CLK3-210ENST00000563112 CHEK1O14757 476 aa12.56□□□□□ -0.4
CLK3-210ENST00000563112 SCGB2A1O75556 95 aa12.56□□□□□ -0.4
CLK3-210ENST00000563112 RNASE2P10153 161 aaKnown RBP12.56□□□□□ -0.4
CLK3-210ENST00000563112 TNFSF8P32971 234 aa12.56□□□□□ -0.4
CLK3-210ENST00000563112 CMC4P56277 68 aaPredicted RBP12.56□□□□□ -0.4
CLK3-210ENST00000563112 TMEM268Q5VZI3 342 aa12.56□□□□□ -0.4
CLK3-210ENST00000563112 SELENOHQ8IZQ5 122 aaKnown RBP12.56□□□□□ -0.4
CLK3-210ENST00000563112 UBQLN2Q9UHD9 624 aa12.56□□□□□ -0.4
CLK3-210ENST00000563112 APOC4P55056 127 aa12.55□□□□□ -0.4
CLK3-210ENST00000563112 PVRIGQ6DKI7 326 aa12.55□□□□□ -0.4
CLK3-210ENST00000563112 ZNF600Q6ZNG1 722 aa12.55□□□□□ -0.4
CLK3-210ENST00000563112 OR52E5Q8NH55 327 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms