RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 MEIS3P1A6NDR6 274 aa11.94□□□□□ -0.5
CLN3-208ENST00000561505 TAS2R46P59540 309 aa11.94□□□□□ -0.5
CLN3-208ENST00000561505 HSPE1P61604 102 aaKnown RBP11.94□□□□□ -0.5
CLN3-208ENST00000561505 CMTM3Q96MX0 182 aa11.94□□□□□ -0.5
CLN3-208ENST00000561505 GINS3Q9BRX5 216 aa11.94□□□□□ -0.5
CLN3-208ENST00000561505 MS4A6AQ9H2W1 248 aa11.94□□□□□ -0.5
CLN3-208ENST00000561505 IGHV3-49A0A0A0MS15 119 aa11.93□□□□□ -0.5
CLN3-208ENST00000561505 ZNF705EA8MWA4 302 aaPredicted RBP11.93□□□□□ -0.5
CLN3-208ENST00000561505 CA1P00915 261 aaPredicted RBP11.93□□□□□ -0.5
CLN3-208ENST00000561505 APOHP02749 345 aaPredicted RBP11.93□□□□□ -0.5
CLN3-208ENST00000561505 RBMY1A1P0DJD3 496 aaKnown RBP11.93□□□□□ -0.5
CLN3-208ENST00000561505 RBMY1CP0DJD4 496 aa11.93□□□□□ -0.5
CLN3-208ENST00000561505 TFPI2P48307 235 aa11.93□□□□□ -0.5
CLN3-208ENST00000561505 RBMY1FQ15415 496 aaKnown RBP11.93□□□□□ -0.5
CLN3-208ENST00000561505 TMEM41BQ5BJD5 291 aa11.93□□□□□ -0.5
CLN3-208ENST00000561505 GBGT1Q8N5D6 347 aa11.93□□□□□ -0.5
CLN3-208ENST00000561505 DUSP18Q8NEJ0 188 aa11.93□□□□□ -0.5
CLN3-208ENST00000561505 OR6F1Q8NGZ6 308 aa11.93□□□□□ -0.5
CLN3-208ENST00000561505 ST8SIA2Q92186 375 aa11.93□□□□□ -0.5
CLN3-208ENST00000561505 S100A16Q96FQ6 103 aaKnown RBP11.93□□□□□ -0.5
CLN3-208ENST00000561505 IFT46Q9NQC8 304 aa11.93□□□□□ -0.5
CLN3-208ENST00000561505 FBXL17Q9UF56 701 aa11.93□□□□□ -0.5
CLN3-208ENST00000561505 A0A1B0GVY2 172 aa11.92□□□□□ -0.5
CLN3-208ENST00000561505 GNG7O60262 68 aa11.92□□□□□ -0.5
CLN3-208ENST00000561505 YIF1AO95070 293 aa11.92□□□□□ -0.5
CLN3-208ENST00000561505 PMP2P02689 132 aa11.92□□□□□ -0.5
CLN3-208ENST00000561505 UCP3P55916 312 aa11.92□□□□□ -0.5
CLN3-208ENST00000561505 DEFB131AP59861 70 aa11.92□□□□□ -0.5
CLN3-208ENST00000561505 ZNF600Q6ZNG1 722 aa11.92□□□□□ -0.5
CLN3-208ENST00000561505 TRPT1Q86TN4 253 aaKnown RBP11.92□□□□□ -0.5
CLN3-208ENST00000561505 CROCCP3Q8IVE0 287 aa11.92□□□□□ -0.5
CLN3-208ENST00000561505 FAM24BQ8N5W8 94 aa11.92□□□□□ -0.5
CLN3-208ENST00000561505 MISP3Q96FF7 219 aa11.92□□□□□ -0.5
CLN3-208ENST00000561505 GRAMD2BQ96HH9 432 aa11.92□□□□□ -0.5
CLN3-208ENST00000561505 DNAH2Q9P225 4427 aa11.92□□□□□ -0.5
CLN3-208ENST00000561505 RYR1P21817 5038 aa11.91□□□□□ -0.5
CLN3-208ENST00000561505 IGKV3-7A0A075B6H7 116 aa11.91□□□□□ -0.5
CLN3-208ENST00000561505 IGHV3OR16-13A0A075B7E8 117 aa11.91□□□□□ -0.5
CLN3-208ENST00000561505 IGHV3-74A0A0B4J1X5 117 aa11.91□□□□□ -0.5
CLN3-208ENST00000561505 TMEM50AO95807 157 aa11.91□□□□□ -0.5
CLN3-208ENST00000561505 P0C879 139 aa11.91□□□□□ -0.5
CLN3-208ENST00000561505 NPBWR1P48145 328 aa11.91□□□□□ -0.5
CLN3-208ENST00000561505 TAS2R20P59543 309 aa11.91□□□□□ -0.5
CLN3-208ENST00000561505 LPCAT3Q6P1A2 487 aa11.91□□□□□ -0.5
CLN3-208ENST00000561505 LINC00336Q6ZUF6 198 aa11.91□□□□□ -0.5
CLN3-208ENST00000561505 CSNK1G2-AS1Q8NCQ2 148 aa11.91□□□□□ -0.5
CLN3-208ENST00000561505 OR5H2Q8NGV7 314 aa11.91□□□□□ -0.5
CLN3-208ENST00000561505 X6R8D5 127 aa11.91□□□□□ -0.5
CLN3-208ENST00000561505 A0A1B0GU03 582 aa11.9□□□□□ -0.5
CLN3-208ENST00000561505 K7EQG2 157 aa11.9□□□□□ -0.5
CLN3-208ENST00000561505 DEFB4AO15263 64 aa11.9□□□□□ -0.5
CLN3-208ENST00000561505 IGHV3-48P01763 117 aa11.9□□□□□ -0.5
CLN3-208ENST00000561505 MIFP14174 115 aa11.9□□□□□ -0.5
CLN3-208ENST00000561505 UBE2NLQ5JXB2 153 aa11.9□□□□□ -0.5
CLN3-208ENST00000561505 TSPAN14Q8NG11 270 aa11.9□□□□□ -0.5
CLN3-208ENST00000561505 GPX8Q8TED1 209 aa11.9□□□□□ -0.5
CLN3-208ENST00000561505 IGHV4-28A0A0C4DH34 117 aa11.89□□□□□ -0.51
CLN3-208ENST00000561505 LOC100506127A0A0U1RQW1 187 aa11.89□□□□□ -0.51
CLN3-208ENST00000561505 IGLL5B9A064 214 aa11.89□□□□□ -0.51
CLN3-208ENST00000561505 ST8SIA3O43173 380 aa11.89□□□□□ -0.51
CLN3-208ENST00000561505 CRYBB3P26998 211 aa11.89□□□□□ -0.51
CLN3-208ENST00000561505 PRSS3P35030 304 aa11.89□□□□□ -0.51
CLN3-208ENST00000561505 HRH1P35367 487 aa11.89□□□□□ -0.51
CLN3-208ENST00000561505 ERHP84090 104 aaKnown RBP11.89□□□□□ -0.51
CLN3-208ENST00000561505 LEMD1Q68G75 181 aa11.89□□□□□ -0.51
CLN3-208ENST00000561505 MORN3Q6PF18 240 aaPredicted RBP11.89□□□□□ -0.51
CLN3-208ENST00000561505 H2BFWTQ7Z2G1 175 aa11.89□□□□□ -0.51
CLN3-208ENST00000561505 TBC1D26Q86UD7 250 aa11.89□□□□□ -0.51
CLN3-208ENST00000561505 OR4A16Q8NH70 328 aa11.89□□□□□ -0.51
CLN3-208ENST00000561505 PUS1Q9Y606 427 aaKnown RBP eCLIP11.89□□□□□ -0.51
CLN3-208ENST00000561505 PKHD1P08F94 4074 aa11.88□□□□□ -0.51
CLN3-208ENST00000561505 EIF4EP06730 217 aaKnown RBP11.88□□□□□ -0.51
CLN3-208ENST00000561505 SPP1P10451 314 aa11.88□□□□□ -0.51
CLN3-208ENST00000561505 HLA-DMBP28068 263 aa11.88□□□□□ -0.51
CLN3-208ENST00000561505 PHLDA2Q53GA4 152 aa11.88□□□□□ -0.51
CLN3-208ENST00000561505 TMEM69Q5SWH9 247 aa11.88□□□□□ -0.51
CLN3-208ENST00000561505 DCANP1Q8TF63 244 aa11.88□□□□□ -0.51
CLN3-208ENST00000561505 RNF126Q9BV68 326 aa11.88□□□□□ -0.51
CLN3-208ENST00000561505 TMEM231Q9H6L2 316 aa11.88□□□□□ -0.51
CLN3-208ENST00000561505 U3KQE9 123 aa11.88□□□□□ -0.51
CLN3-208ENST00000561505 DYNC1H1Q14204 4646 aaKnown RBP11.87□□□□□ -0.51
CLN3-208ENST00000561505 ELOA3CA0A087WX78 387 aaPredicted RBP11.87□□□□□ -0.51
CLN3-208ENST00000561505 TRAV10A0A0B4J240 114 aa11.87□□□□□ -0.51
CLN3-208ENST00000561505 A0A0B4J293 547 aa11.87□□□□□ -0.51
CLN3-208ENST00000561505 A0A1W2PS18 150 aa11.87□□□□□ -0.51
CLN3-208ENST00000561505 DNASE2O00115 360 aaPredicted RBP11.87□□□□□ -0.51
CLN3-208ENST00000561505 RPS19P39019 145 aaKnown RBP11.87□□□□□ -0.51
CLN3-208ENST00000561505 RPL5P46777 297 aaKnown RBP11.87□□□□□ -0.51
CLN3-208ENST00000561505 RND3P61587 244 aa11.87□□□□□ -0.51
CLN3-208ENST00000561505 BSXQ3C1V8 233 aa11.87□□□□□ -0.51
CLN3-208ENST00000561505 STHQ8IWL8 128 aa11.87□□□□□ -0.51
CLN3-208ENST00000561505 MRGPRFQ96AM1 343 aa11.87□□□□□ -0.51
CLN3-208ENST00000561505 DNAH11Q96DT5 4516 aa11.86□□□□□ -0.51
CLN3-208ENST00000561505 IGKV1-5P01602 117 aa11.86□□□□□ -0.51
CLN3-208ENST00000561505 RNASE2P10153 161 aaKnown RBP11.86□□□□□ -0.51
CLN3-208ENST00000561505 C4BPBP20851 252 aa11.86□□□□□ -0.51
CLN3-208ENST00000561505 NPPCP23582 126 aa11.86□□□□□ -0.51
CLN3-208ENST00000561505 HLA-DMAP28067 261 aa11.86□□□□□ -0.51
CLN3-208ENST00000561505 S100GP29377 79 aa11.86□□□□□ -0.51
CLN3-208ENST00000561505 Q6ZTC4 211 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms