RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	HIST1H2BD	P58876	126 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	RPS20	P60866	119 aa	Known RBP	0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	SPCS3	P61009	180 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	LSM6	P62312	80 aa	Known RBP	0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	SNRPD2	P62316	118 aa	Known RBP	0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	HIST1H2BC	P62807	126 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	RAN	P62826	216 aa	Known RBP	0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	HBA1	P69905	142 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	PDE6H	Q13956	83 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	NDUFA5	Q16718	116 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	HIST2H2BE	Q16778	126 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	IAH1	Q2TAA2	248 aa	Predicted RBP	0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	SPANXN3	Q5MJ09	141 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	C10orf55	Q5SWW7	151 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	C8orf74	Q6P047	294 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	LPCAT3	Q6P1A2	487 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435		Q6ZS49	121 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	RPS19BP1	Q86WX3	136 aa	Known RBP	0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	CLDN22	Q8N7P3	220 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	OR51D1	Q8NGF3	324 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	AQP3	Q92482	292 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	H1FX	Q92522	213 aa	Known RBP	0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	HIST1H2BH	Q93079	126 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	TMEM106A	Q96A25	262 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	PRAP1	Q96NZ9	151 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	SCGB3A1	Q96QR1	104 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	TSPAN32	Q96QS1	320 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	HIST1H2BN	Q99877	126 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	HIST1H2BM	Q99879	126 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	DCSTAMP	Q9H295	470 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	CST9L	Q9H4G1	147 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	FAM96A	Q9H5X1	160 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	UCK1	Q9HA47	277 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	PRTFDC1	Q9NRG1	225 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	PKIG	Q9Y2B9	76 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	TMEM56-RWDD3	S4R434	201 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	MAST2	Q6P0Q8	1798 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	WRN	Q14191	1432 aa	Predicted RBP eCLIP	0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	SETD5	Q9C0A6	1442 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	GLI3	P10071	1580 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	RALGAPA2	Q2PPJ7	1873 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	ROBO3	Q96MS0	1386 aa		0.18	□□□□□ -2.38
SPG11-222	ENST00000560435	PCDH15	Q96QU1	1955 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	DLG5	Q8TDM6	1919 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	EXOC1L	A0A1B0GW35	172 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	SMIM9	A6NGZ8	99 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	C2orf70	A6NJV1	201 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	SMIM23	A6NLE4	172 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435		M0R2N4	97 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	PSMD12	O00232	456 aa	Predicted RBP	0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	HCRT	O43612	131 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	ADGRB2	O60241	1585 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	TECTA	O75443	2155 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	OR2J2	O76002	312 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	OR5F1	O95221	314 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	ZFYVE9	O95405	1425 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	CNIH1	O95406	144 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	ZNF682	O95780	498 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	TCL1B	O95988	128 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	IFNA10	P01566	189 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	TCRB	P04435	133 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	UBB	P0CG47	229 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	CRYGA	P11844	174 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	MIF	P14174	115 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	IL9	P15248	144 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	OMP	P47874	163 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	CDC42	P60953	191 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	ERVS71-1	P61550	626 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	CNBP	P62633	177 aa	Known RBP	0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	HIST1H3A	P68431	136 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	CCL7	P80098	99 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	H3F3A	P84243	136 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	PRB3	Q04118	309 aa	Predicted RBP	0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	AES	Q08117	197 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	PLCXD2	Q0VAA5	305 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	EDDM3A	Q14507	147 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	CDK5R1	Q15078	307 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	RHEB	Q15382	184 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	KCNJ8	Q15842	424 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	LINC01554	Q52M75	96 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435		Q6Q795	121 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	MIR17HG	Q75NE6	70 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	ALPK2	Q86TB3	2170 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	HEATR5A	Q86XA9	2040 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	PHF13	Q86YI8	300 aa	Predicted RBP	0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	OR6V1	Q8N148	313 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	INTS1	Q8N201	2190 aa	Known RBP	0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	FAM19A2	Q8N3H0	131 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	ANKRD29	Q8N6D5	301 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	C3orf56	Q8N813	242 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	ZNF565	Q8N9K5	539 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	OR52R1	Q8NGF1	315 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	OR5B17	Q8NGF7	314 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	OR4D11	Q8NGI4	311 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	OR10J5	Q8NHC4	309 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	BORCS7	Q96B45	105 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	ADAT3	Q96EY9	351 aa	Predicted RBP	0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	LINC00526	Q96FQ7	95 aa		0.17	□□□□□ -2.38
SPG11-222	ENST00000560435	DCUN1D1	Q96GG9	259 aa		0.17	□□□□□ -2.38

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