RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, human

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP3-215	ENST00000559771	THAP6	Q8TBB0	222 aa		4.38	□□□□□ -1.71
USP3-215	ENST00000559771	ABHD5	Q8WTS1	349 aa		4.38	□□□□□ -1.71
USP3-215	ENST00000559771	DDB2	Q92466	427 aa		4.38	□□□□□ -1.71
USP3-215	ENST00000559771	ARHGAP5-AS1	Q96IT6	56 aa		4.38	□□□□□ -1.71
USP3-215	ENST00000559771	PDCD10	Q9BUL8	212 aa		4.38	□□□□□ -1.71
USP3-215	ENST00000559771	ELOVL1	Q9BW60	279 aa		4.38	□□□□□ -1.71
USP3-215	ENST00000559771	PECR	Q9BY49	303 aa		4.38	□□□□□ -1.71
USP3-215	ENST00000559771	ARL6	Q9H0F7	186 aa		4.38	□□□□□ -1.71
USP3-215	ENST00000559771	HIPK2	Q9H2X6	1198 aa		4.38	□□□□□ -1.71
USP3-215	ENST00000559771	PLEKHJ1	Q9NW61	149 aa		4.38	□□□□□ -1.71
USP3-215	ENST00000559771	SDHAF2	Q9NX18	166 aa		4.38	□□□□□ -1.71
USP3-215	ENST00000559771	RDH8	Q9NYR8	311 aa		4.38	□□□□□ -1.71
USP3-215	ENST00000559771	SIGLEC8	Q9NYZ4	499 aa		4.38	□□□□□ -1.71
USP3-215	ENST00000559771	TNFSF18	Q9UNG2	199 aa		4.38	□□□□□ -1.71
USP3-215	ENST00000559771	IGKV1D-8	A0A087WSZ0	117 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	FXYD6-FXYD2	A0A087WZ82	144 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	RNF222	A6NCQ9	220 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	RBMY1B	A6NDE4	496 aa	Known RBP	4.37	□□□□□ -1.71
USP3-215	ENST00000559771	MEIS3P1	A6NDR6	274 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	RBMY1E	A6NEQ0	496 aa	Known RBP	4.37	□□□□□ -1.71
USP3-215	ENST00000559771	TRDC	B7Z8K6	153 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771		M0R1X1	148 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	BMPR1B	O00238	502 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	TAAR5	O14804	337 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	BCL2L11	O43521	198 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	RBMY1D	P0C7P1	496 aa	Known RBP	4.37	□□□□□ -1.71
USP3-215	ENST00000559771	APELA	P0DMC3	54 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	ZP3	P21754	424 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	PSMB6	P28072	239 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	NUP62	P37198	522 aa	Predicted RBP	4.37	□□□□□ -1.71
USP3-215	ENST00000559771	UCP3	P55916	312 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	RPS16	P62249	146 aa	Known RBP	4.37	□□□□□ -1.71
USP3-215	ENST00000559771	PPP1R1A	Q13522	171 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	TMEM177	Q53S58	311 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	IGSF11	Q5DX21	431 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	EIF5AL1	Q6IS14	154 aa	Known RBP	4.37	□□□□□ -1.71
USP3-215	ENST00000559771	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	4.37	□□□□□ -1.71
USP3-215	ENST00000559771	COMMD7	Q86VX2	200 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	SGPP2	Q8IWX5	399 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	ADAD2	Q8NCV1	583 aa	Known RBP	4.37	□□□□□ -1.71
USP3-215	ENST00000559771	STOML3	Q8TAV4	291 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	PPP1R1C	Q8WVI7	109 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	NUDCD2	Q8WVJ2	157 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	MRGPRF	Q96AM1	343 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	TSNAX	Q99598	290 aa	Known RBP	4.37	□□□□□ -1.71
USP3-215	ENST00000559771	FAM110A	Q9BQ89	295 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	FXYD6	Q9H0Q3	95 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	WFDC10A	Q9H1F0	79 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	RIMS4	Q9H426	269 aa	Predicted RBP	4.37	□□□□□ -1.71
USP3-215	ENST00000559771	C5orf66	Q9H5L9	145 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	CHMP1A	Q9HD42	196 aa	Predicted RBP	4.37	□□□□□ -1.71
USP3-215	ENST00000559771	C12orf4	Q9NQ89	552 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	PEF1	Q9UBV8	284 aa	Known RBP	4.37	□□□□□ -1.71
USP3-215	ENST00000559771	FBXL7	Q9UJT9	491 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	C14orf166	Q9Y224	244 aa	Known RBP	4.37	□□□□□ -1.71
USP3-215	ENST00000559771	KCNIP3	Q9Y2W7	256 aa		4.37	□□□□□ -1.71
USP3-215	ENST00000559771	KMT2A	Q03164	3969 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	TNC	P24821	2201 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	TRAV14DV4	A0A0A6YYC5	116 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	TRBV9	A0A0B4J1U6	114 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771		A0A0G2JLM5	398 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	4.36	□□□□□ -1.71
USP3-215	ENST00000559771	C13orf42	A0A1B0GVH6	325 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771		A0A1B0GW64	132 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	MFSD2B	A6NFX1	497 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	MSGN1	A6NI15	193 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	LINC00473	A8K010	186 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771		H0Y980	276 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	TEX46	H3BTG2	121 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	CFD	P00746	253 aa	Predicted RBP	4.36	□□□□□ -1.71
USP3-215	ENST00000559771	PMP2	P02689	132 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	PRH1	P02810	166 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	CTSD	P07339	412 aa	Predicted RBP	4.36	□□□□□ -1.71
USP3-215	ENST00000559771	NMB	P08949	121 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	CD7	P09564	240 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	CTXN2	P0C2S0	81 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	AKR1C4	P17516	323 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	SRPX	P78539	464 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	FHL2	Q14192	279 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	CD300E	Q496F6	205 aa	Predicted RBP	4.36	□□□□□ -1.71
USP3-215	ENST00000559771	AADACL3	Q5VUY0	350 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	UQCC3	Q6UW78	93 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	GVQW1	Q8N7I0	195 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	LRTM2	Q8N967	370 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	4.36	□□□□□ -1.71
USP3-215	ENST00000559771	MAFIP	Q8WZ33	124 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	ST8SIA2	Q92186	375 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	RBPMS	Q93062	196 aa	Known RBP	4.36	□□□□□ -1.71
USP3-215	ENST00000559771	GALNT14	Q96FL9	552 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	C2orf50	Q96LR7	162 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	ARPC5L	Q9BPX5	153 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	CMSS1	Q9BQ75	279 aa	Known RBP	4.36	□□□□□ -1.71
USP3-215	ENST00000559771	CABLES2	Q9BTV7	478 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	ST6GALNAC5	Q9BVH7	336 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	OR2D2	Q9H210	308 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	PLEKHA3	Q9HB20	300 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	ZNF355P	Q9NSJ1	428 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	SLC35D1	Q9NTN3	355 aa		4.36	□□□□□ -1.71
USP3-215	ENST00000559771	ZNF230	Q9UIE0	474 aa	Predicted RBP	4.36	□□□□□ -1.71
USP3-215	ENST00000559771	ANXA10	Q9UJ72	324 aa		4.36	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms