RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 IAH1Q2TAA2 248 aaPredicted RBP0.64□□□□□ -2.31
USP3-209ENST00000558925 TMEM97Q5BJF2 176 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.64□□□□□ -2.31
USP3-209ENST00000558925 IBA57Q5T440 356 aaKnown RBP0.64□□□□□ -2.31
USP3-209ENST00000558925 C9orf64Q5T6V5 341 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 HACD4Q5VWC8 232 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 FAM173BQ6P4H8 233 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 RPL22L1Q6P5R6 122 aaKnown RBP0.64□□□□□ -2.31
USP3-209ENST00000558925 DYNAPQ8N1N2 210 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 C12orf45Q8N5I9 185 aaPredicted RBP0.64□□□□□ -2.31
USP3-209ENST00000558925 OR52L1Q8NGH7 329 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 OR51A2Q8NGJ7 313 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 OR10X1Q8NGY0 326 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 SLC25A40Q8TBP6 338 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 RASSF5Q8WWW0 418 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 DNAJC9Q8WXX5 260 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 SLC7A6Q92536 515 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 HIST1H2BHQ93079 126 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 TOMM6Q96B49 74 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 HIST1H2BNQ99877 126 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 HIST1H2BMQ99879 126 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 TRIM4Q9C037 500 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 COMMD5Q9GZQ3 224 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 PSTPIP2Q9H939 334 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 BAIAP2Q9UQB8 552 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 FAM32AQ9Y421 112 aaKnown RBP0.64□□□□□ -2.31
USP3-209ENST00000558925 TMEM56-RWDD3S4R434 201 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 KDM5BQ9UGL1 1544 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 RGS12O14924 1447 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 ARFGEF3Q5TH69 2177 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 SCAF11Q99590 1463 aaKnown RBP0.63□□□□□ -2.31
USP3-209ENST00000558925 NUP155O75694 1391 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 TRBV10-2A0A0K0K1G8 114 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 MEIS3P1A6NDR6 274 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 FAM159BA6NKW6 160 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 PIRO00625 290 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 CIAO1O76071 339 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 OR7C1O76099 320 aaPredicted RBP0.63□□□□□ -2.31
USP3-209ENST00000558925 C1QAP02745 245 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 CLPSP04118 112 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 MSMBP08118 114 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 CST2P09228 141 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 UBBP0CG47 229 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 SRIP30626 198 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 PPP1R2P41236 205 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 CDC42P60953 191 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 SPA17Q15506 151 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 PPP1R2P3Q6NXS1 205 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 LCN15Q6UWW0 184 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 C7orf65Q6ZTY9 151 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 COA5Q86WW8 74 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 GDPD1Q8N9F7 314 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 C15orf53Q8NAA6 179 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 ZNF439Q8NDP4 499 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 OR13C4Q8NGS5 318 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 TERB2Q8NHR7 220 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 PFN4Q8NHR9 129 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 CT55Q8WUE5 264 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 BORCS7Q96B45 105 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 Q96M85 177 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 CMSS1Q9BQ75 279 aaKnown RBP0.63□□□□□ -2.31
USP3-209ENST00000558925 DOHHQ9BU89 302 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 C9orf16Q9BUW7 83 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 CCDC90BQ9GZT6 254 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 ARL2BPQ9Y2Y0 163 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 SAMHD1Q9Y3Z3 626 aaKnown RBP0.63□□□□□ -2.31
USP3-209ENST00000558925 MYH7BA7E2Y1 1941 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 COL5A3P25940 1745 aaPredicted RBP0.63□□□□□ -2.31
USP3-209ENST00000558925 PIK3C2GO75747 1445 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 TTC21AQ8NDW8 1320 aa0.63□□□□□ -2.31
USP3-209ENST00000558925 PCF11O94913 1555 aaKnown RBP0.62□□□□□ -2.31
USP3-209ENST00000558925 UNC79Q9P2D8 2635 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 IGKV1D-42A0A075B6H8 117 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 IRGMA1A4Y4 181 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 C1orf196B1AJZ1 125 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 PMP2P02689 132 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 SERPINE1P05121 402 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 C8GP07360 202 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 CYBAP13498 195 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 SPI1P17947 270 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 FKBP2P26885 142 aaKnown RBP0.62□□□□□ -2.31
USP3-209ENST00000558925 G0S2P27469 103 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 G6PCP35575 357 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 EMP1P54849 157 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 HIST1H4AP62805 103 aaKnown RBP0.62□□□□□ -2.31
USP3-209ENST00000558925 HIST1H3AP68431 136 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 H3F3AP84243 136 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 ZNF345Q14585 488 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 NNATQ16517 81 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 Q1T7F1 81 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 ARHGAP11BQ3KRB8 267 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 LIN52Q52LA3 116 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 TMEM42Q69YG0 159 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 Q6ZQT0 140 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 KRT222Q8N1A0 295 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 WFDC11Q8NEX6 87 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 OR8B3Q8NGG8 313 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 OR5A1Q8NGJ0 315 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 MCFD2Q8NI22 146 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 STAG3L4Q8TBR4 150 aa0.62□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms