RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 PLPP5Q8NEB5 264 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 ROPN1LQ96C74 230 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 ZC2HC1AQ96GY0 325 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 PACRGQ96M98 296 aaPredicted RBP-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 XPNPEP1Q9NQW7 623 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 EURLQ9NYK6 297 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 BDP1A6H8Y1 2624 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 RALGAPA2Q2PPJ7 1873 aa-0.33□□□□□ -2.46
VPS13C-205ENST00000558088 CEP192Q8TEP8 1941 aa-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 C5orf67F2Z3F1 127 aa-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 INMT-MINDY4F8WBC2 141 aa-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 AHSA1O95433 338 aa-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 ZNF682O95780 498 aa-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 IL3P08700 152 aa-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 MAP2K4P45985 399 aa-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 CDC34P49427 236 aaPredicted RBP-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 CXCR4P61073 352 aa-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 FBXO48Q5FWF7 155 aa-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 CDKL4Q5MAI5 379 aa-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 DOCK3Q8IZD9 2030 aa-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 ST6GALNAC3Q8NDV1 305 aa-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 OR5L1Q8NGL2 311 aa-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 SIKE1Q9BRV8 207 aa-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 DERL1Q9BUN8 251 aa-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 SCN3AQ9NY46 2000 aa-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 EPDR1Q9UM22 224 aa-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 SLC35A3Q9Y2D2 325 aa-0.34□□□□□ -2.46
VPS13C-205ENST00000558088 CASP8AP2Q9UKL3 1982 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 OTOGQ6ZRI0 2925 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 TPRP12270 2363 aaKnown RBP-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 A0A0J9YY10 115 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 TRBV6-4A0A1B0GX49 114 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 A0A1B0GX78 115 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 F8VZ95 297 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 CCL16O15467 120 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 FAM228BP0C875 321 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 HIST1H2BOP23527 126 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 HIST1H2BBP33778 126 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 HIST1H2BDP58876 126 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 HIST1H2BCP62807 126 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 TNFAIP6P98066 277 aaPredicted RBP-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 CAV1Q03135 178 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 SLAMF1Q13291 335 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 ANGPT1Q15389 498 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 HIST2H2BEQ16778 126 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 COQ5Q5HYK3 327 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 SPANXN3Q5MJ09 141 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 HIST2H2BFQ5QNW6 126 aaPredicted RBP-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 MIR17HGQ75NE6 70 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 COMMD7Q86VX2 200 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 PXT1Q8NFP0 134 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 PFN4Q8NHR9 129 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 HIST1H2BHQ93079 126 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 DIRAS2Q96HU8 199 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 CNBD2Q96M20 576 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 HIST1H2BNQ99877 126 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 HIST1H2BMQ99879 126 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 AGPAT3Q9NRZ7 376 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 CHMP5Q9NZZ3 219 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 TP53TG1Q9Y2A0 90 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 C15orf41Q9Y2V0 281 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 KIF15Q9NS87 1388 aa-0.35□□□□□ -2.47
VPS13C-205ENST00000558088 CITO14578 2027 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 TRAV23DV6A0A075B6W5 121 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 IGHV1-58A0A0C4DH39 117 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 TRBV30A0A0K0K1B3 111 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 TINCRA0A1B0GVN0 87 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 DISC1C4P0D8 188 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 FTCDNL1E5RQL4 147 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 CCL1P22362 96 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 MAP3K7CLP57077 242 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 HBA1P69905 142 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 CCL20P78556 96 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 BATFQ16520 125 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 GUK1Q16774 197 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 RPL22L1Q6P5R6 122 aaKnown RBP-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 DNM1P34Q6PK57 102 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 GPR32P1Q8NGA4 272 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 JOSD2Q8TAC2 188 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 PSMF1Q92530 271 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 GPR146Q96CH1 333 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 IMP4Q96G21 291 aaKnown RBP-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 DCUN1D5Q9BTE7 237 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 WFDC10AQ9H1F0 79 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 PSTPIP2Q9H939 334 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 SLC39A9Q9NUM3 307 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 POLR1DQ9Y2S0 133 aa-0.36□□□□□ -2.47
VPS13C-205ENST00000558088 ORM1P02763 201 aa-0.37□□□□□ -2.47
VPS13C-205ENST00000558088 TNFAIP8L2Q6P589 184 aaPredicted RBP-0.37□□□□□ -2.47
VPS13C-205ENST00000558088 Q86TA4 180 aa-0.37□□□□□ -2.47
VPS13C-205ENST00000558088 LINC00301Q8NCQ3 95 aa-0.37□□□□□ -2.47
VPS13C-205ENST00000558088 OR10AC1Q8NH08 325 aa-0.37□□□□□ -2.47
VPS13C-205ENST00000558088 KLK6Q92876 244 aa-0.37□□□□□ -2.47
VPS13C-205ENST00000558088 ITFG2Q969R8 447 aa-0.37□□□□□ -2.47
VPS13C-205ENST00000558088 DHRS9Q9BPW9 319 aa-0.37□□□□□ -2.47
VPS13C-205ENST00000558088 WDR61Q9GZS3 305 aaKnown RBP-0.37□□□□□ -2.47
VPS13C-205ENST00000558088 OR51V1Q9H2C8 321 aa-0.37□□□□□ -2.47
VPS13C-205ENST00000558088 OR51I2Q9H344 312 aa-0.37□□□□□ -2.47
VPS13C-205ENST00000558088 TMEM138Q9NPI0 162 aa-0.37□□□□□ -2.47
VPS13C-205ENST00000558088 ORMDL1Q9P0S3 153 aa-0.37□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms