RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 IGKV1OR2-108A0A075B7D4 117 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 IGHV3OR16-13A0A075B7E8 117 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 IGHV3-74A0A0B4J1X5 117 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 SIAH2O43255 324 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 HIST1H2BKO60814 126 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 HIST1H2BJP06899 126 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 P0C879 139 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 HIST1H2BOP23527 126 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 LOXP28300 417 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-215ENST00000552823 APOBEC3AP31941 199 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-215ENST00000552823 HIST1H2BBP33778 126 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 HIST1H2BDP58876 126 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 HIST1H2BCP62807 126 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 HIST2H2BEQ16778 126 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-215ENST00000552823 HEPN1Q6WQI6 88 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 ZNF439Q8NDP4 499 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 OR4X1Q8NH49 305 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 HIST1H2BHQ93079 126 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 SLC35E1Q96K37 410 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 HIST1H2BNQ99877 126 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 HIST1H2BMQ99879 126 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 TUBA4BQ9H853 241 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 COA4Q9NYJ1 87 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 NAT8Q9UHE5 227 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 MDFIC2A0A1B0GVS7 189 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 PPP5D1E7EU14 171 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 F6UZH7 168 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 PPP1R2P9O14990 202 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 LINC00869P0C866 280 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 CGB3P0DN86 165 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 CGB7P0DN87 165 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 GNG5P63218 68 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 GAMTQ14353 236 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 MMDQ15546 238 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 EFNB3Q15768 340 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 TMEM95Q3KNT9 176 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 ZNF672Q499Z4 452 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-215ENST00000552823 SLC25A48Q6ZT89 311 aaKnown RBP4.54□□□□□ -1.68
LIMA1-215ENST00000552823 SGMS2Q8NHU3 365 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 OCC1Q8TAD7 63 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 MIOXQ9UGB7 285 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 HRNRQ86YZ3 2850 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-215ENST00000552823 PIGBOS1A0A0B4J2F0 54 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 H0YJW9 148 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 MBP02144 154 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 SOD3P08294 240 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 GCHFRP30047 84 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 TMPRSS3P57727 454 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 ERVFC1-1P60608 527 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 GNB2P62879 340 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 LCN2P80188 198 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 WT1-ASQ06250 92 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 HLA-DRB5Q30154 266 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 MRPL54Q6P161 138 aaKnown RBP4.53□□□□□ -1.68
LIMA1-215ENST00000552823 PQLC2Q6ZP29 291 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 DMRTC2Q8IXT2 367 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-215ENST00000552823 OR1L8Q8NGR8 309 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 RNASE7Q9H1E1 156 aaKnown RBP4.53□□□□□ -1.68
LIMA1-215ENST00000552823 ZNF355PQ9NSJ1 428 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 ELOVL5Q9NYP7 299 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 METTL1Q9UBP6 276 aaKnown RBP4.53□□□□□ -1.68
LIMA1-215ENST00000552823 LINC00312Q9Y6C7 94 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 DSCAML1Q8TD84 2053 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 TRAV20A0A0B4J274 112 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 RBFOX2O43251 390 aaKnown RBP eCLIP4.53□□□□□ -1.68
LIMA1-215ENST00000552823 COX7A2P2O60397 106 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 PPOXP50336 477 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 LYZP61626 148 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 UBE2L3P68036 154 aaKnown RBP4.53□□□□□ -1.68
LIMA1-215ENST00000552823 OR5AU1Q8NGC0 362 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 SLC25A33Q9BSK2 321 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 FNDC4Q9H6D8 234 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-215ENST00000552823 TUBG2Q9NRH3 451 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 LINC00527Q9UJ94 153 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 PRNDQ9UKY0 176 aa4.53□□□□□ -1.68
LIMA1-215ENST00000552823 XKRY2A2RUG3 117 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 C5orf52A6NGY3 159 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 PHOX2AO14813 284 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 IGHV1-8P0DP01 117 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 TMEM11P17152 192 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 AGAP20933 346 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 CBLN1P23435 193 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 RHOBP62745 196 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 DDB2Q92466 427 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 TOLLIPQ9H0E2 274 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 TNFRSF19Q9NS68 423 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 ZNF835Q9Y2P0 537 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 IGSF10Q6WRI0 2623 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 ZANQ9Y493 2812 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 TRBV20OR9-2A0A075B6H5 130 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 IGHV3-49A0A0A0MS15 119 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 LINC00587B1AMM8 73 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 CFHR2P36980 270 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 GATA4P43694 442 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 VMA21Q3ZAQ7 101 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 OR2T10Q8NGZ9 312 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 C22orf15Q8WYQ4 148 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 C1orf159Q96HA4 380 aa4.52□□□□□ -1.69
LIMA1-215ENST00000552823 VKORC1Q9BQB6 163 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms