RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 RAB31Q13636 194 aa12.26□□□□□ -0.45
USP28-214ENST00000545540 FAM19A2Q8N3H0 131 aa12.26□□□□□ -0.45
USP28-214ENST00000545540 RITA1Q96K30 269 aa12.26□□□□□ -0.45
USP28-214ENST00000545540 NDUFAF3Q9BU61 184 aa12.26□□□□□ -0.45
USP28-214ENST00000545540 LHBP01229 141 aa12.25□□□□□ -0.45
USP28-214ENST00000545540 PMCHP20382 165 aa12.25□□□□□ -0.45
USP28-214ENST00000545540 KRTDAPP60985 99 aa12.25□□□□□ -0.45
USP28-214ENST00000545540 IQCJQ1A5X6 159 aa12.25□□□□□ -0.45
USP28-214ENST00000545540 C1orf162Q8NEQ5 155 aaPredicted RBP12.25□□□□□ -0.45
USP28-214ENST00000545540 TOX4O94842 621 aa12.25□□□□□ -0.45
USP28-214ENST00000545540 GLRXP35754 106 aa12.25□□□□□ -0.45
USP28-214ENST00000545540 PPIAL4AQ9Y536 164 aa12.25□□□□□ -0.45
USP28-214ENST00000545540 CASP6P55212 293 aa12.25□□□□□ -0.45
USP28-214ENST00000545540 TRAT1Q6PIZ9 186 aa12.25□□□□□ -0.45
USP28-214ENST00000545540 ATOH7Q8N100 152 aa12.25□□□□□ -0.45
USP28-214ENST00000545540 HARBI1Q96MB7 349 aa12.25□□□□□ -0.45
USP28-214ENST00000545540 RCHY1Q96PM5 261 aa12.25□□□□□ -0.45
USP28-214ENST00000545540 TPSG1Q9NRR2 321 aa12.25□□□□□ -0.45
USP28-214ENST00000545540 CD24P25063 80 aa12.24□□□□□ -0.45
USP28-214ENST00000545540 HCP5Q6MZN7 132 aa12.24□□□□□ -0.45
USP28-214ENST00000545540 ZADH2Q8N4Q0 377 aa12.24□□□□□ -0.45
USP28-214ENST00000545540 IL36BQ9NZH7 164 aa12.24□□□□□ -0.45
USP28-214ENST00000545540 MRPL36Q9P0J6 103 aaKnown RBP12.24□□□□□ -0.45
USP28-214ENST00000545540 RALYQ9UKM9 306 aaKnown RBP12.24□□□□□ -0.45
USP28-214ENST00000545540 FCN3O75636 299 aa12.24□□□□□ -0.45
USP28-214ENST00000545540 PRR20EP86478 221 aa12.24□□□□□ -0.45
USP28-214ENST00000545540 PRR20CP86479 221 aa12.24□□□□□ -0.45
USP28-214ENST00000545540 PRR20DP86480 221 aa12.24□□□□□ -0.45
USP28-214ENST00000545540 PRR20BP86481 221 aa12.24□□□□□ -0.45
USP28-214ENST00000545540 PRR20AP86496 221 aa12.24□□□□□ -0.45
USP28-214ENST00000545540 LYPD2Q6UXB3 125 aa12.24□□□□□ -0.45
USP28-214ENST00000545540 ENSAO43768 121 aaKnown RBP12.24□□□□□ -0.45
USP28-214ENST00000545540 OR52E5Q8NH55 327 aa12.24□□□□□ -0.45
USP28-214ENST00000545540 BLNKQ8WV28 456 aa12.24□□□□□ -0.45
USP28-214ENST00000545540 GSX1Q9H4S2 264 aaPredicted RBP12.24□□□□□ -0.45
USP28-214ENST00000545540 SLC45A2Q9UMX9 530 aa12.24□□□□□ -0.45
USP28-214ENST00000545540 V9GYV3 84 aa12.24□□□□□ -0.45
USP28-214ENST00000545540 TAS2R60P59551 318 aa12.23□□□□□ -0.45
USP28-214ENST00000545540 GNG5P63218 68 aa12.23□□□□□ -0.45
USP28-214ENST00000545540 ASCL2Q99929 193 aa12.23□□□□□ -0.45
USP28-214ENST00000545540 GNB4Q9HAV0 340 aa12.23□□□□□ -0.45
USP28-214ENST00000545540 CUL9Q8IWT3 2517 aa12.23□□□□□ -0.45
USP28-214ENST00000545540 MKRN2OSH3BPM6 223 aa12.23□□□□□ -0.45
USP28-214ENST00000545540 NTF3P20783 257 aa12.23□□□□□ -0.45
USP28-214ENST00000545540 RAB7AP51149 207 aa12.23□□□□□ -0.45
USP28-214ENST00000545540 TMPRSS3P57727 454 aa12.23□□□□□ -0.45
USP28-214ENST00000545540 RPEL1Q2QD12 228 aa12.23□□□□□ -0.45
USP28-214ENST00000545540 LEMD1Q68G75 181 aa12.23□□□□□ -0.45
USP28-214ENST00000545540 FOXA2Q9Y261 457 aaPredicted RBP12.23□□□□□ -0.45
USP28-214ENST00000545540 TCAPO15273 167 aa12.23□□□□□ -0.45
USP28-214ENST00000545540 TIMM23BQ5SRD1 257 aa12.23□□□□□ -0.45
USP28-214ENST00000545540 STUMQ69YW2 141 aa12.23□□□□□ -0.45
USP28-214ENST00000545540 NPIPB3Q92617 1050 aa12.23□□□□□ -0.45
USP28-214ENST00000545540 NEUROG1Q92886 237 aa12.23□□□□□ -0.45
USP28-214ENST00000545540 UPK2O00526 184 aa12.22□□□□□ -0.45
USP28-214ENST00000545540 MOSP00540 346 aa12.22□□□□□ -0.45
USP28-214ENST00000545540 OR5G3P0C626 314 aa12.22□□□□□ -0.45
USP28-214ENST00000545540 IRF2P14316 349 aa12.22□□□□□ -0.45
USP28-214ENST00000545540 GPR6P46095 362 aaPredicted RBP12.22□□□□□ -0.45
USP28-214ENST00000545540 ZNF439Q8NDP4 499 aa12.22□□□□□ -0.45
USP28-214ENST00000545540 COMMD5Q9GZQ3 224 aa12.22□□□□□ -0.45
USP28-214ENST00000545540 A8MXE2 369 aa12.22□□□□□ -0.45
USP28-214ENST00000545540 SELENOVP59797 346 aa12.22□□□□□ -0.45
USP28-214ENST00000545540 LOXL4Q96JB6 756 aa12.22□□□□□ -0.45
USP28-214ENST00000545540 SSBP4Q9BWG4 385 aaPredicted RBP12.22□□□□□ -0.45
USP28-214ENST00000545540 ZNF355PQ9NSJ1 428 aa12.22□□□□□ -0.45
USP28-214ENST00000545540 TM4SF5O14894 197 aa12.21□□□□□ -0.45
USP28-214ENST00000545540 ORM2P19652 201 aa12.21□□□□□ -0.45
USP28-214ENST00000545540 CD40P25942 277 aa12.21□□□□□ -0.45
USP28-214ENST00000545540 RANP62826 216 aaKnown RBP12.21□□□□□ -0.45
USP28-214ENST00000545540 UBE2L3P68036 154 aaKnown RBP12.21□□□□□ -0.45
USP28-214ENST00000545540 MZT1Q08AG7 82 aa12.21□□□□□ -0.45
USP28-214ENST00000545540 AARDQ4LEZ3 155 aa12.21□□□□□ -0.45
USP28-214ENST00000545540 OR5AU1Q8NGC0 362 aa12.21□□□□□ -0.45
USP28-214ENST00000545540 TMEM106BQ9NUM4 274 aa12.21□□□□□ -0.45
USP28-214ENST00000545540 SLC25A10Q9UBX3 287 aaPredicted RBP12.21□□□□□ -0.45
USP28-214ENST00000545540 LYNX1G3V0Z9 82 aa12.21□□□□□ -0.45
USP28-214ENST00000545540 LYNX1P0DP58 116 aa12.21□□□□□ -0.45
USP28-214ENST00000545540 CCKARP32238 428 aa12.21□□□□□ -0.45
USP28-214ENST00000545540 WNT10AQ9GZT5 417 aa12.21□□□□□ -0.45
USP28-214ENST00000545540 FNDC4Q9H6D8 234 aaPredicted RBP12.21□□□□□ -0.45
USP28-214ENST00000545540 MBD3L4A6NDZ8 208 aaPredicted RBP12.21□□□□□ -0.46
USP28-214ENST00000545540 MBD3L3A6NE82 208 aaPredicted RBP12.21□□□□□ -0.46
USP28-214ENST00000545540 MBD3L5A6NJ08 208 aaPredicted RBP12.21□□□□□ -0.46
USP28-214ENST00000545540 CD99P14209 185 aa12.21□□□□□ -0.46
USP28-214ENST00000545540 SSTP61278 116 aa12.21□□□□□ -0.46
USP28-214ENST00000545540 RTL8BQ17RB0 113 aa12.21□□□□□ -0.46
USP28-214ENST00000545540 KIR3DL3Q8N743 410 aa12.21□□□□□ -0.46
USP28-214ENST00000545540 MBD3L2Q8NHZ7 208 aaPredicted RBP12.21□□□□□ -0.46
USP28-214ENST00000545540 BTF3L4Q96K17 158 aa12.21□□□□□ -0.46
USP28-214ENST00000545540 NOL4LQ96MY1 436 aaPredicted RBP12.21□□□□□ -0.46
USP28-214ENST00000545540 TRGV8A0A0C4DH27 118 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 A0A1W2PN81 502 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 SLC25A17O43808 307 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 RNASE2P10153 161 aaKnown RBP12.2□□□□□ -0.46
USP28-214ENST00000545540 SRIP30626 198 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 PRCDQ00LT1 54 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 TIGITQ495A1 244 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 OR10X1Q8NGY0 326 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 RPUSD1Q9UJJ7 312 aaKnown RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms