RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 SPINK9Q5DT21 86 aa9.45□□□□□ -0.9
DDX55-210ENST00000543016 ZNF343Q6P1L6 599 aa9.45□□□□□ -0.9
DDX55-210ENST00000543016 KLHL30-AS1Q8NEE0 82 aa9.45□□□□□ -0.9
DDX55-210ENST00000543016 SMIM8Q96KF7 97 aa9.45□□□□□ -0.9
DDX55-210ENST00000543016 RANGRFQ9HD47 186 aaPredicted RBP9.45□□□□□ -0.9
DDX55-210ENST00000543016 I3L521 148 aa9.44□□□□□ -0.9
DDX55-210ENST00000543016 CCSO14618 274 aa9.44□□□□□ -0.9
DDX55-210ENST00000543016 SCAF4O95104 1147 aaKnown RBP9.44□□□□□ -0.9
DDX55-210ENST00000543016 NDUFB8O95169 186 aa9.44□□□□□ -0.9
DDX55-210ENST00000543016 IFNA10P01566 189 aa9.44□□□□□ -0.9
DDX55-210ENST00000543016 HSPB1P04792 205 aaKnown RBP9.44□□□□□ -0.9
DDX55-210ENST00000543016 PVALBP20472 110 aaPredicted RBP9.44□□□□□ -0.9
DDX55-210ENST00000543016 FCGR2BP31994 310 aaPredicted RBP9.44□□□□□ -0.9
DDX55-210ENST00000543016 NSUN5P1Q3KNT7 163 aa9.44□□□□□ -0.9
DDX55-210ENST00000543016 ETFRF1Q6IPR1 90 aa9.44□□□□□ -0.9
DDX55-210ENST00000543016 LCNL1Q6ZST4 164 aa9.44□□□□□ -0.9
DDX55-210ENST00000543016 TXN2Q99757 166 aa9.44□□□□□ -0.9
DDX55-210ENST00000543016 MGAT4CQ9UBM8 478 aa9.44□□□□□ -0.9
DDX55-210ENST00000543016 DMRT1Q9Y5R6 373 aa9.44□□□□□ -0.9
DDX55-210ENST00000543016 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.43□□□□□ -0.9
DDX55-210ENST00000543016 A0A1W2PRX2 142 aa9.43□□□□□ -0.9
DDX55-210ENST00000543016 TSC22D2O75157 780 aa9.43□□□□□ -0.9
DDX55-210ENST00000543016 NXPH3O95157 252 aa9.43□□□□□ -0.9
DDX55-210ENST00000543016 SCGB1D2O95969 90 aa9.43□□□□□ -0.9
DDX55-210ENST00000543016 MBPP02686 304 aaPredicted RBP9.43□□□□□ -0.9
DDX55-210ENST00000543016 RLN2P04090 185 aa9.43□□□□□ -0.9
DDX55-210ENST00000543016 ZP3P21754 424 aa9.43□□□□□ -0.9
DDX55-210ENST00000543016 MFAP2P55001 183 aa9.43□□□□□ -0.9
DDX55-210ENST00000543016 POLR2GP62487 172 aaKnown RBP eCLIP9.43□□□□□ -0.9
DDX55-210ENST00000543016 OR1N2Q8NGR9 330 aa9.43□□□□□ -0.9
DDX55-210ENST00000543016 DPF1Q92782 380 aa9.43□□□□□ -0.9
DDX55-210ENST00000543016 MISP3Q96FF7 219 aa9.43□□□□□ -0.9
DDX55-210ENST00000543016 MAGT1Q9H0U3 335 aa9.43□□□□□ -0.9
DDX55-210ENST00000543016 GNB4Q9HAV0 340 aa9.43□□□□□ -0.9
DDX55-210ENST00000543016 C21orf62Q9NYP8 219 aa9.43□□□□□ -0.9
DDX55-210ENST00000543016 PEF1Q9UBV8 284 aaKnown RBP9.43□□□□□ -0.9
DDX55-210ENST00000543016 STRAPQ9Y3F4 350 aaKnown RBP9.43□□□□□ -0.9
DDX55-210ENST00000543016 TENM1Q9UKZ4 2725 aa9.43□□□□□ -0.9
DDX55-210ENST00000543016 I3L2K1 104 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 K7EIM0 57 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 L7N2F9 121 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 CCL24O00175 119 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 SCGB2A1O75556 95 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 MT-CO2P00403 227 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 IGHV3-11P01762 117 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 OR8U8P0C7N1 319 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 PET100P0DJ07 73 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 SLC25A4P12235 298 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 GPX4P36969 197 aaPredicted RBP9.42□□□□□ -0.9
DDX55-210ENST00000543016 NPBWR1P48145 328 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 MFAP4P55083 255 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 RRAS2P62070 204 aaPredicted RBP9.42□□□□□ -0.9
DDX55-210ENST00000543016 VAMP2P63027 116 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 ZNF616Q08AN1 781 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 C8orf86Q6ZUL3 223 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 ZNF502Q8TBZ5 544 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 SCARB1Q8WTV0 552 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 CACNG8Q8WXS5 425 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 PSENENQ9NZ42 101 aa9.42□□□□□ -0.9
DDX55-210ENST00000543016 LINC01619G3V211 115 aa9.41□□□□□ -0.9
DDX55-210ENST00000543016 K7EPK0 472 aa9.41□□□□□ -0.9
DDX55-210ENST00000543016 LCE2BO14633 110 aa9.41□□□□□ -0.9
DDX55-210ENST00000543016 SSSCA1O60232 199 aa9.41□□□□□ -0.9
DDX55-210ENST00000543016 PF4P02776 101 aa9.41□□□□□ -0.9
DDX55-210ENST00000543016 IFNA4P05014 189 aa9.41□□□□□ -0.9
DDX55-210ENST00000543016 IAPPP10997 89 aa9.41□□□□□ -0.9
DDX55-210ENST00000543016 OPRK1P41145 380 aa9.41□□□□□ -0.9
DDX55-210ENST00000543016 H2BFSP57053 126 aa9.41□□□□□ -0.9
DDX55-210ENST00000543016 FHL3Q13643 280 aa9.41□□□□□ -0.9
DDX55-210ENST00000543016 PRR31Q5SQ13 230 aa9.41□□□□□ -0.9
DDX55-210ENST00000543016 SPSB3Q6PJ21 355 aa9.41□□□□□ -0.9
DDX55-210ENST00000543016 C19orf35Q6ZS72 473 aa9.41□□□□□ -0.9
DDX55-210ENST00000543016 OR11H1Q8NG94 326 aa9.41□□□□□ -0.9
DDX55-210ENST00000543016 RAX2Q96IS3 184 aa9.41□□□□□ -0.9
DDX55-210ENST00000543016 RCL1Q9Y2P8 373 aaKnown RBP9.41□□□□□ -0.9
DDX55-210ENST00000543016 TRAV30A0A087WSZ9 112 aa9.4□□□□□ -0.9
DDX55-210ENST00000543016 MFSD2BA6NFX1 497 aa9.4□□□□□ -0.9
DDX55-210ENST00000543016 C15orf62A8K5M9 175 aa9.4□□□□□ -0.9
DDX55-210ENST00000543016 GGCTO75223 188 aaKnown RBP9.4□□□□□ -0.9
DDX55-210ENST00000543016 SIX6O95475 246 aa9.4□□□□□ -0.9
DDX55-210ENST00000543016 S100A10P60903 97 aa9.4□□□□□ -0.9
DDX55-210ENST00000543016 FGL1Q08830 312 aa9.4□□□□□ -0.9
DDX55-210ENST00000543016 RAB32Q13637 225 aa9.4□□□□□ -0.9
DDX55-210ENST00000543016 FCN2Q15485 313 aa9.4□□□□□ -0.9
DDX55-210ENST00000543016 SPANXN5Q5MJ07 72 aa9.4□□□□□ -0.9
DDX55-210ENST00000543016 ETV3LQ6ZN32 361 aa9.4□□□□□ -0.9
DDX55-210ENST00000543016 C18orf65Q6ZTR6 163 aa9.4□□□□□ -0.9
DDX55-210ENST00000543016 OR4X1Q8NH49 305 aa9.4□□□□□ -0.9
DDX55-210ENST00000543016 TMEM170AQ8WVE7 144 aa9.4□□□□□ -0.9
DDX55-210ENST00000543016 DCUN1D4Q92564 292 aa9.4□□□□□ -0.9
DDX55-210ENST00000543016 PINX1Q96BK5 328 aaKnown RBP9.4□□□□□ -0.9
DDX55-210ENST00000543016 BSCL2Q96G97 398 aaPredicted RBP9.4□□□□□ -0.9
DDX55-210ENST00000543016 OR5B12Q96R08 314 aa9.4□□□□□ -0.9
DDX55-210ENST00000543016 ZNF436Q9C0F3 470 aaPredicted RBP9.4□□□□□ -0.9
DDX55-210ENST00000543016 LSM5Q9Y4Y9 91 aaKnown RBP9.4□□□□□ -0.9
DDX55-210ENST00000543016 WNK1Q9H4A3 2382 aa9.39□□□□□ -0.91
DDX55-210ENST00000543016 E5RGE8 158 aa9.39□□□□□ -0.91
DDX55-210ENST00000543016 DEDDO75618 318 aa9.39□□□□□ -0.91
DDX55-210ENST00000543016 CLEC3BP05452 202 aa9.39□□□□□ -0.91
DDX55-210ENST00000543016 GIPP09681 153 aaPredicted RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms