RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 NPY1RP25929 384 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 RRAS2P62070 204 aaPredicted RBP13.29□□□□□ -0.28
LIG1-204ENST00000542460 RPP30P78346 268 aaKnown RBP13.29□□□□□ -0.28
LIG1-204ENST00000542460 DEFA5Q01523 94 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 FCN2Q15485 313 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 NSUN5P1Q3KNT7 163 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 C11orf87Q6NUJ2 197 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 C4orf3Q8WVX3 66 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 PPP1R14BQ96C90 147 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 RAB40CQ96S21 281 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 CORTO00230 105 aa13.28□□□□□ -0.28
LIG1-204ENST00000542460 IGHV3-11P01762 117 aa13.28□□□□□ -0.28
LIG1-204ENST00000542460 KLHL30-AS1Q8NEE0 82 aa13.28□□□□□ -0.28
LIG1-204ENST00000542460 MISP3Q96FF7 219 aa13.28□□□□□ -0.28
LIG1-204ENST00000542460 SMIM8Q96KF7 97 aa13.28□□□□□ -0.28
LIG1-204ENST00000542460 CXorf58Q96LI9 332 aa13.28□□□□□ -0.28
LIG1-204ENST00000542460 GNB4Q9HAV0 340 aa13.28□□□□□ -0.28
LIG1-204ENST00000542460 RCL1Q9Y2P8 373 aaKnown RBP13.28□□□□□ -0.28
LIG1-204ENST00000542460 LSM5Q9Y4Y9 91 aaKnown RBP13.28□□□□□ -0.28
LIG1-204ENST00000542460 K7EPK0 472 aa13.27□□□□□ -0.29
LIG1-204ENST00000542460 RUNX1Q01196 453 aa13.27□□□□□ -0.29
LIG1-204ENST00000542460 RAB32Q13637 225 aa13.27□□□□□ -0.29
LIG1-204ENST00000542460 C18orf65Q6ZTR6 163 aa13.27□□□□□ -0.29
LIG1-204ENST00000542460 OR11H7Q8NGC8 314 aa13.27□□□□□ -0.29
LIG1-204ENST00000542460 VN1R17PQ8TDU5 208 aa13.27□□□□□ -0.29
LIG1-204ENST00000542460 I3L521 148 aa13.26□□□□□ -0.29
LIG1-204ENST00000542460 HNRNPCP07910 306 aaKnown RBP eCLIP13.26□□□□□ -0.29
LIG1-204ENST00000542460 LGALS1P09382 135 aaKnown RBP13.26□□□□□ -0.29
LIG1-204ENST00000542460 TAS2R30P59541 319 aa13.26□□□□□ -0.29
LIG1-204ENST00000542460 S100A10P60903 97 aa13.26□□□□□ -0.29
LIG1-204ENST00000542460 ZNF343Q6P1L6 599 aa13.26□□□□□ -0.29
LIG1-204ENST00000542460 RNASEH2CQ8TDP1 164 aaKnown RBP13.26□□□□□ -0.29
LIG1-204ENST00000542460 TMEM170AQ8WVE7 144 aa13.26□□□□□ -0.29
LIG1-204ENST00000542460 EEF1AKMT3Q96AZ1 226 aa13.26□□□□□ -0.29
LIG1-204ENST00000542460 OR5B12Q96R08 314 aa13.26□□□□□ -0.29
LIG1-204ENST00000542460 PSENENQ9NZ42 101 aa13.26□□□□□ -0.29
LIG1-204ENST00000542460 TRBV7-1A0A0A6YYK4 115 aa13.25□□□□□ -0.29
LIG1-204ENST00000542460 I3L2K1 104 aa13.25□□□□□ -0.29
LIG1-204ENST00000542460 K7EIM0 57 aa13.25□□□□□ -0.29
LIG1-204ENST00000542460 L7N2F9 121 aa13.25□□□□□ -0.29
LIG1-204ENST00000542460 TMEM50AO95807 157 aa13.25□□□□□ -0.29
LIG1-204ENST00000542460 PVALBP20472 110 aaPredicted RBP13.25□□□□□ -0.29
LIG1-204ENST00000542460 PAX9P55771 341 aa13.25□□□□□ -0.29
LIG1-204ENST00000542460 RAB11AP62491 216 aa13.25□□□□□ -0.29
LIG1-204ENST00000542460 VAMP2P63027 116 aa13.25□□□□□ -0.29
LIG1-204ENST00000542460 EXOSC2Q13868 293 aaKnown RBP13.25□□□□□ -0.29
LIG1-204ENST00000542460 FAM209BQ5JX69 171 aa13.25□□□□□ -0.29
LIG1-204ENST00000542460 SPANXN5Q5MJ07 72 aa13.25□□□□□ -0.29
LIG1-204ENST00000542460 C8orf86Q6ZUL3 223 aa13.25□□□□□ -0.29
LIG1-204ENST00000542460 PPP1R1CQ8WVI7 109 aa13.25□□□□□ -0.29
LIG1-204ENST00000542460 PINX1Q96BK5 328 aaKnown RBP13.25□□□□□ -0.29
LIG1-204ENST00000542460 STRAPQ9Y3F4 350 aaKnown RBP13.25□□□□□ -0.29
LIG1-204ENST00000542460 MFSD2BA6NFX1 497 aa13.24□□□□□ -0.29
LIG1-204ENST00000542460 M0QZ24 198 aa13.24□□□□□ -0.29
LIG1-204ENST00000542460 MT-CO2P00403 227 aa13.24□□□□□ -0.29
LIG1-204ENST00000542460 RLN2P04090 185 aa13.24□□□□□ -0.29
LIG1-204ENST00000542460 OR4F17Q8NGA8 305 aa13.24□□□□□ -0.29
LIG1-204ENST00000542460 SCARB1Q8WTV0 552 aa13.24□□□□□ -0.29
LIG1-204ENST00000542460 ASB13Q8WXK3 278 aa13.24□□□□□ -0.29
LIG1-204ENST00000542460 WDR89Q96FK6 387 aaPredicted RBP13.24□□□□□ -0.29
LIG1-204ENST00000542460 OR4F4Q96R69 305 aa13.24□□□□□ -0.29
LIG1-204ENST00000542460 ZNF436Q9C0F3 470 aaPredicted RBP13.24□□□□□ -0.29
LIG1-204ENST00000542460 IGHV3-21A0A0B4J1V1 117 aa13.23□□□□□ -0.29
LIG1-204ENST00000542460 C15orf62A8K5M9 175 aa13.23□□□□□ -0.29
LIG1-204ENST00000542460 H3BP45 60 aa13.23□□□□□ -0.29
LIG1-204ENST00000542460 TSC22D2O75157 780 aa13.23□□□□□ -0.29
LIG1-204ENST00000542460 IFNA4P05014 189 aa13.23□□□□□ -0.29
LIG1-204ENST00000542460 OR8U8P0C7N1 319 aa13.23□□□□□ -0.29
LIG1-204ENST00000542460 OPRK1P41145 380 aa13.23□□□□□ -0.29
LIG1-204ENST00000542460 LRRC37A5PQ49AS3 106 aa13.23□□□□□ -0.29
LIG1-204ENST00000542460 OR4C12Q96R67 309 aa13.23□□□□□ -0.29
LIG1-204ENST00000542460 PEF1Q9UBV8 284 aaKnown RBP13.23□□□□□ -0.29
LIG1-204ENST00000542460 PAIP2BQ9ULR5 123 aaKnown RBP13.23□□□□□ -0.29
LIG1-204ENST00000542460 S4R3C0 116 aa13.23□□□□□ -0.29
LIG1-204ENST00000542460 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.23□□□□□ -0.29
LIG1-204ENST00000542460 DEDDO75618 318 aa13.23□□□□□ -0.29
LIG1-204ENST00000542460 OR11H1Q8NG94 326 aa13.23□□□□□ -0.29
LIG1-204ENST00000542460 ZNF502Q8TBZ5 544 aa13.23□□□□□ -0.29
LIG1-204ENST00000542460 ATP6V0BQ99437 205 aa13.23□□□□□ -0.29
LIG1-204ENST00000542460 C11orf1Q9H5F2 150 aa13.23□□□□□ -0.29
LIG1-204ENST00000542460 RANGRFQ9HD47 186 aaPredicted RBP13.23□□□□□ -0.29
LIG1-204ENST00000542460 C21orf62Q9NYP8 219 aa13.23□□□□□ -0.29
LIG1-204ENST00000542460 RPS10-NUDT3A0A1W2PQS6 291 aa13.22□□□□□ -0.29
LIG1-204ENST00000542460 ANKRD34BA5PLL1 514 aa13.22□□□□□ -0.29
LIG1-204ENST00000542460 MPC2O95563 127 aa13.22□□□□□ -0.29
LIG1-204ENST00000542460 IGHV3-23P01764 117 aa13.22□□□□□ -0.29
LIG1-204ENST00000542460 HSPB1P04792 205 aaKnown RBP13.22□□□□□ -0.29
LIG1-204ENST00000542460 GIPP09681 153 aaPredicted RBP13.22□□□□□ -0.29
LIG1-204ENST00000542460 PET100P0DJ07 73 aa13.22□□□□□ -0.29
LIG1-204ENST00000542460 DEFB136Q30KP8 78 aa13.22□□□□□ -0.29
LIG1-204ENST00000542460 ETFRF1Q6IPR1 90 aa13.22□□□□□ -0.29
LIG1-204ENST00000542460 ETV3LQ6ZN32 361 aa13.22□□□□□ -0.29
LIG1-204ENST00000542460 OR1N2Q8NGR9 330 aa13.22□□□□□ -0.29
LIG1-204ENST00000542460 RAX2Q96IS3 184 aa13.22□□□□□ -0.29
LIG1-204ENST00000542460 CCDC140Q96MF4 163 aa13.22□□□□□ -0.29
LIG1-204ENST00000542460 FNDC4Q9H6D8 234 aaPredicted RBP13.22□□□□□ -0.29
LIG1-204ENST00000542460 CCL24O00175 119 aa13.21□□□□□ -0.29
LIG1-204ENST00000542460 CLEC3BP05452 202 aa13.21□□□□□ -0.29
LIG1-204ENST00000542460 FCGR2BP31994 310 aaPredicted RBP13.21□□□□□ -0.29
LIG1-204ENST00000542460 MYCNOSP40205 109 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms