RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 VCX3BQ9H321 246 aa11.25□□□□□ -0.61
CLSTN3-213ENST00000541953 ZFAND3Q9H8U3 227 aa11.25□□□□□ -0.61
CLSTN3-213ENST00000541953 DIABLOQ9NR28 239 aa11.25□□□□□ -0.61
CLSTN3-213ENST00000541953 PRNDQ9UKY0 176 aa11.25□□□□□ -0.61
CLSTN3-213ENST00000541953 TRAV14DV4A0A0A6YYC5 116 aa11.24□□□□□ -0.61
CLSTN3-213ENST00000541953 A0A1B0GU03 582 aa11.24□□□□□ -0.61
CLSTN3-213ENST00000541953 SNAPC5O75971 98 aa11.24□□□□□ -0.61
CLSTN3-213ENST00000541953 DFFBO76075 338 aa11.24□□□□□ -0.61
CLSTN3-213ENST00000541953 NAT1P18440 290 aa11.24□□□□□ -0.61
CLSTN3-213ENST00000541953 MFAP4P55083 255 aa11.24□□□□□ -0.61
CLSTN3-213ENST00000541953 TAS2R20P59543 309 aa11.24□□□□□ -0.61
CLSTN3-213ENST00000541953 RELQ04864 619 aaPredicted RBP11.24□□□□□ -0.61
CLSTN3-213ENST00000541953 LYSMD2Q8IV50 215 aa11.24□□□□□ -0.61
CLSTN3-213ENST00000541953 CADM3Q8N126 398 aa11.24□□□□□ -0.61
CLSTN3-213ENST00000541953 ZNF114Q8NC26 417 aa11.24□□□□□ -0.61
CLSTN3-213ENST00000541953 C2CD4CQ8TF44 421 aa11.24□□□□□ -0.61
CLSTN3-213ENST00000541953 TMEM56Q96MV1 263 aa11.24□□□□□ -0.61
CLSTN3-213ENST00000541953 C6orf62Q9GZU0 229 aaPredicted RBP11.24□□□□□ -0.61
CLSTN3-213ENST00000541953 VSIRQ9H7M9 311 aa11.24□□□□□ -0.61
CLSTN3-213ENST00000541953 MRPL36Q9P0J6 103 aaKnown RBP11.24□□□□□ -0.61
CLSTN3-213ENST00000541953 IGLL5B9A064 214 aa11.23□□□□□ -0.61
CLSTN3-213ENST00000541953 GPR31O00270 319 aa11.23□□□□□ -0.61
CLSTN3-213ENST00000541953 C4BPBP20851 252 aa11.23□□□□□ -0.61
CLSTN3-213ENST00000541953 HLA-DMAP28067 261 aa11.23□□□□□ -0.61
CLSTN3-213ENST00000541953 HRH1P35367 487 aa11.23□□□□□ -0.61
CLSTN3-213ENST00000541953 NEDD8Q15843 81 aa11.23□□□□□ -0.61
CLSTN3-213ENST00000541953 OR5H2Q8NGV7 314 aa11.23□□□□□ -0.61
CLSTN3-213ENST00000541953 MRGPRFQ96AM1 343 aa11.23□□□□□ -0.61
CLSTN3-213ENST00000541953 MFFQ9GZY8 342 aa11.23□□□□□ -0.61
CLSTN3-213ENST00000541953 IGHV4-28A0A0C4DH34 117 aa11.22□□□□□ -0.61
CLSTN3-213ENST00000541953 IFNA4P05014 189 aa11.22□□□□□ -0.61
CLSTN3-213ENST00000541953 PRCDQ00LT1 54 aa11.22□□□□□ -0.61
CLSTN3-213ENST00000541953 TMEM187Q14656 261 aa11.22□□□□□ -0.61
CLSTN3-213ENST00000541953 TBC1D26Q86UD7 250 aa11.22□□□□□ -0.61
CLSTN3-213ENST00000541953 SCRT1Q9BWW7 348 aa11.22□□□□□ -0.61
CLSTN3-213ENST00000541953 PUS1Q9Y606 427 aaKnown RBP eCLIP11.22□□□□□ -0.61
CLSTN3-213ENST00000541953 ST8SIA3O43173 380 aa11.21□□□□□ -0.61
CLSTN3-213ENST00000541953 GNG7O60262 68 aa11.21□□□□□ -0.61
CLSTN3-213ENST00000541953 UBE2NLQ5JXB2 153 aa11.21□□□□□ -0.61
CLSTN3-213ENST00000541953 TMEM69Q5SWH9 247 aa11.21□□□□□ -0.61
CLSTN3-213ENST00000541953 Q6ZTC4 211 aa11.21□□□□□ -0.61
CLSTN3-213ENST00000541953 CMTM1Q8IZ96 169 aa11.21□□□□□ -0.61
CLSTN3-213ENST00000541953 SAMD12Q8N8I0 201 aa11.21□□□□□ -0.61
CLSTN3-213ENST00000541953 TSPAN14Q8NG11 270 aa11.21□□□□□ -0.61
CLSTN3-213ENST00000541953 BORCS5Q969J3 196 aa11.21□□□□□ -0.61
CLSTN3-213ENST00000541953 TXN2Q99757 166 aa11.21□□□□□ -0.61
CLSTN3-213ENST00000541953 HSPG2P98160 4391 aa11.21□□□□□ -0.62
CLSTN3-213ENST00000541953 ELOA3CA0A087WX78 387 aaPredicted RBP11.2□□□□□ -0.62
CLSTN3-213ENST00000541953 A0A1B0GVY2 172 aa11.2□□□□□ -0.62
CLSTN3-213ENST00000541953 KNCNA6PVL3 124 aa11.2□□□□□ -0.62
CLSTN3-213ENST00000541953 EIF4EP06730 217 aaKnown RBP11.2□□□□□ -0.62
CLSTN3-213ENST00000541953 RPS19P39019 145 aaKnown RBP11.2□□□□□ -0.62
CLSTN3-213ENST00000541953 TRPT1Q86TN4 253 aaKnown RBP11.2□□□□□ -0.62
CLSTN3-213ENST00000541953 OR6F1Q8NGZ6 308 aa11.2□□□□□ -0.62
CLSTN3-213ENST00000541953 CMTM3Q96MX0 182 aa11.2□□□□□ -0.62
CLSTN3-213ENST00000541953 CLEC5AQ9NY25 188 aa11.2□□□□□ -0.62
CLSTN3-213ENST00000541953 FKBP11Q9NYL4 201 aa11.2□□□□□ -0.62
CLSTN3-213ENST00000541953 CELA1Q9UNI1 258 aa11.2□□□□□ -0.62
CLSTN3-213ENST00000541953 X6R8D5 127 aa11.2□□□□□ -0.62
CLSTN3-213ENST00000541953 IGKV1-5P01602 117 aa11.19□□□□□ -0.62
CLSTN3-213ENST00000541953 HLA-DMBP28068 263 aa11.19□□□□□ -0.62
CLSTN3-213ENST00000541953 PPP5CP53041 499 aa11.19□□□□□ -0.62
CLSTN3-213ENST00000541953 TAS2R46P59540 309 aa11.19□□□□□ -0.62
CLSTN3-213ENST00000541953 HSPE1P61604 102 aaKnown RBP11.19□□□□□ -0.62
CLSTN3-213ENST00000541953 MLANAQ16655 118 aa11.19□□□□□ -0.62
CLSTN3-213ENST00000541953 ZNF767PQ75MW2 155 aa11.19□□□□□ -0.62
CLSTN3-213ENST00000541953 OR4A16Q8NH70 328 aa11.19□□□□□ -0.62
CLSTN3-213ENST00000541953 S100A16Q96FQ6 103 aaKnown RBP11.19□□□□□ -0.62
CLSTN3-213ENST00000541953 TSC22D3Q99576 134 aa11.19□□□□□ -0.62
CLSTN3-213ENST00000541953 FNDC4Q9H6D8 234 aaPredicted RBP11.19□□□□□ -0.62
CLSTN3-213ENST00000541953 K7EQG2 157 aa11.18□□□□□ -0.62
CLSTN3-213ENST00000541953 DNASE2O00115 360 aaPredicted RBP11.18□□□□□ -0.62
CLSTN3-213ENST00000541953 P0C879 139 aa11.18□□□□□ -0.62
CLSTN3-213ENST00000541953 CMC4P56277 68 aaPredicted RBP11.18□□□□□ -0.62
CLSTN3-213ENST00000541953 LSM3P62310 102 aaKnown RBP11.18□□□□□ -0.62
CLSTN3-213ENST00000541953 ZNF600Q6ZNG1 722 aa11.18□□□□□ -0.62
CLSTN3-213ENST00000541953 H2BFWTQ7Z2G1 175 aa11.18□□□□□ -0.62
CLSTN3-213ENST00000541953 GPX8Q8TED1 209 aa11.18□□□□□ -0.62
CLSTN3-213ENST00000541953 GINS3Q9BRX5 216 aa11.18□□□□□ -0.62
CLSTN3-213ENST00000541953 RABAC1Q9UI14 185 aa11.18□□□□□ -0.62
CLSTN3-213ENST00000541953 A0A0B4J293 547 aa11.17□□□□□ -0.62
CLSTN3-213ENST00000541953 ZNF705EA8MWA4 302 aaPredicted RBP11.17□□□□□ -0.62
CLSTN3-213ENST00000541953 ATP6V1G2O95670 118 aa11.17□□□□□ -0.62
CLSTN3-213ENST00000541953 TMEM50AO95807 157 aa11.17□□□□□ -0.62
CLSTN3-213ENST00000541953 ZNF688P0C7X2 276 aa11.17□□□□□ -0.62
CLSTN3-213ENST00000541953 RNASE2P10153 161 aaKnown RBP11.17□□□□□ -0.62
CLSTN3-213ENST00000541953 PI3P19957 117 aa11.17□□□□□ -0.62
CLSTN3-213ENST00000541953 PRSS3P35030 304 aa11.17□□□□□ -0.62
CLSTN3-213ENST00000541953 RPL11P62913 178 aaKnown RBP11.17□□□□□ -0.62
CLSTN3-213ENST00000541953 PAFAH1B2P68402 229 aa11.17□□□□□ -0.62
CLSTN3-213ENST00000541953 PVRIGQ6DKI7 326 aa11.17□□□□□ -0.62
CLSTN3-213ENST00000541953 STHQ8IWL8 128 aa11.17□□□□□ -0.62
CLSTN3-213ENST00000541953 STXBP6Q8NFX7 210 aa11.17□□□□□ -0.62
CLSTN3-213ENST00000541953 IGHV4-4A0A075B6R2 117 aa11.16□□□□□ -0.62
CLSTN3-213ENST00000541953 A0A0G2JRQ6 117 aa11.16□□□□□ -0.62
CLSTN3-213ENST00000541953 M0QYG6 137 aa11.16□□□□□ -0.62
CLSTN3-213ENST00000541953 CSNK1G2-AS1Q8NCQ2 148 aa11.16□□□□□ -0.62
CLSTN3-213ENST00000541953 DCANP1Q8TF63 244 aa11.16□□□□□ -0.62
CLSTN3-213ENST00000541953 TP53RKQ96S44 253 aa11.16□□□□□ -0.62
CLSTN3-213ENST00000541953 YTHDF1Q9BYJ9 559 aaKnown RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms