RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 ANAPC16Q96DE5 110 aa11.05□□□□□ -0.64
PTPN1-202ENST00000541713 COL27A1Q8IZC6 1860 aaPredicted RBP11.05□□□□□ -0.64
PTPN1-202ENST00000541713 CREBBPQ92793 2442 aa11.05□□□□□ -0.64
PTPN1-202ENST00000541713 UBE2L3P68036 154 aaKnown RBP11.05□□□□□ -0.64
PTPN1-202ENST00000541713 TEX38Q6PEX7 206 aa11.05□□□□□ -0.64
PTPN1-202ENST00000541713 LINC01560Q8TB33 94 aa11.05□□□□□ -0.64
PTPN1-202ENST00000541713 MRPL18Q9H0U6 180 aaKnown RBP11.05□□□□□ -0.64
PTPN1-202ENST00000541713 A0A0G2JNJ9 132 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 FAM87AP0C7U9 286 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 LINC00469Q8N7U9 141 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 HSPB9Q9BQS6 159 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 TMEM242Q9NWH2 141 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 FKBP11Q9NYL4 201 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 Q9UFV3 132 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 BSNQ9UPA5 3926 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 FAM90A27PA6NNH2 459 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 PRRG2O14669 202 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 LINC00869P0C866 280 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 GPR6P46095 362 aaPredicted RBP11.04□□□□□ -0.64
PTPN1-202ENST00000541713 RUSC1-AS1Q66K80 236 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 OR5AU1Q8NGC0 362 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 TBX15Q96SF7 602 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 KCNIP2Q9NS61 270 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 A8MXE2 369 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 SERF1AO75920 110 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 CRISP2P16562 243 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 CCKARP32238 428 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 TMEM108Q6UXF1 575 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 MMD2Q8IY49 270 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 C1orf162Q8NEQ5 155 aaPredicted RBP11.04□□□□□ -0.64
PTPN1-202ENST00000541713 OR1B1Q8NGR6 318 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 FAM168AQ92567 244 aa11.04□□□□□ -0.64
PTPN1-202ENST00000541713 MRPL36Q9P0J6 103 aaKnown RBP11.04□□□□□ -0.64
PTPN1-202ENST00000541713 ZMAT5Q9UDW3 170 aaKnown RBP11.04□□□□□ -0.64
PTPN1-202ENST00000541713 TRGV8A0A0C4DH27 118 aa11.03□□□□□ -0.64
PTPN1-202ENST00000541713 RAB7AP51149 207 aa11.03□□□□□ -0.64
PTPN1-202ENST00000541713 SSBP4Q9BWG4 385 aaPredicted RBP11.03□□□□□ -0.64
PTPN1-202ENST00000541713 ELOVL5Q9NYP7 299 aa11.03□□□□□ -0.64
PTPN1-202ENST00000541713 hADV38S2A0JD32 116 aa11.03□□□□□ -0.64
PTPN1-202ENST00000541713 C16orf97H3BN30 126 aa11.03□□□□□ -0.64
PTPN1-202ENST00000541713 TMEM200BQ69YZ2 307 aa11.03□□□□□ -0.64
PTPN1-202ENST00000541713 CMTM2Q8TAZ6 248 aa11.03□□□□□ -0.64
PTPN1-202ENST00000541713 IGHV3OR16-8A0A075B7F1 116 aa11.03□□□□□ -0.64
PTPN1-202ENST00000541713 MBD3L4A6NDZ8 208 aaPredicted RBP11.03□□□□□ -0.64
PTPN1-202ENST00000541713 MBD3L3A6NE82 208 aaPredicted RBP11.03□□□□□ -0.64
PTPN1-202ENST00000541713 MBD3L5A6NJ08 208 aaPredicted RBP11.03□□□□□ -0.64
PTPN1-202ENST00000541713 H0Y8G0 127 aa11.03□□□□□ -0.64
PTPN1-202ENST00000541713 CDKN1AP38936 164 aa11.03□□□□□ -0.64
PTPN1-202ENST00000541713 PKIAP61925 76 aa11.03□□□□□ -0.64
PTPN1-202ENST00000541713 PLGLAQ15195 96 aa11.03□□□□□ -0.64
PTPN1-202ENST00000541713 TRAT1Q6PIZ9 186 aa11.03□□□□□ -0.64
PTPN1-202ENST00000541713 CENPVQ7Z7K6 275 aaPredicted RBP11.03□□□□□ -0.64
PTPN1-202ENST00000541713 PIP4P1Q86T03 277 aa11.03□□□□□ -0.64
PTPN1-202ENST00000541713 ST6GALNAC3Q8NDV1 305 aa11.03□□□□□ -0.64
PTPN1-202ENST00000541713 MBD3L2Q8NHZ7 208 aaPredicted RBP11.03□□□□□ -0.64
PTPN1-202ENST00000541713 FLYWCH2Q96CP2 140 aaKnown RBP11.03□□□□□ -0.64
PTPN1-202ENST00000541713 ZNF355PQ9NSJ1 428 aa11.03□□□□□ -0.64
PTPN1-202ENST00000541713 COX7A2P2O60397 106 aa11.02□□□□□ -0.65
PTPN1-202ENST00000541713 APOA2P02652 100 aa11.02□□□□□ -0.65
PTPN1-202ENST00000541713 TNXAQ16473 311 aa11.02□□□□□ -0.65
PTPN1-202ENST00000541713 ACTL10Q5JWF8 245 aa11.02□□□□□ -0.65
PTPN1-202ENST00000541713 F2RL2O00254 374 aa11.02□□□□□ -0.65
PTPN1-202ENST00000541713 EREGO14944 169 aa11.02□□□□□ -0.65
PTPN1-202ENST00000541713 JOSD1Q15040 202 aaPredicted RBP11.02□□□□□ -0.65
PTPN1-202ENST00000541713 ADIPOQQ15848 244 aa11.02□□□□□ -0.65
PTPN1-202ENST00000541713 IQCJQ1A5X6 159 aa11.02□□□□□ -0.65
PTPN1-202ENST00000541713 TIGITQ495A1 244 aa11.02□□□□□ -0.65
PTPN1-202ENST00000541713 CUBNO60494 3623 aa11.02□□□□□ -0.65
PTPN1-202ENST00000541713 GGTLC3B5MD39 225 aa11.01□□□□□ -0.65
PTPN1-202ENST00000541713 HOXB1P14653 301 aaPredicted RBP11.01□□□□□ -0.65
PTPN1-202ENST00000541713 TGIF2LXQ8IUE1 241 aa11.01□□□□□ -0.65
PTPN1-202ENST00000541713 EAF1Q96JC9 268 aaPredicted RBP11.01□□□□□ -0.65
PTPN1-202ENST00000541713 ZNF714Q96N38 554 aa11.01□□□□□ -0.65
PTPN1-202ENST00000541713 PPIAL4AQ9Y536 164 aa11.01□□□□□ -0.65
PTPN1-202ENST00000541713 IGHV3-35A0A0C4DH35 117 aa11.01□□□□□ -0.65
PTPN1-202ENST00000541713 UPK2O00526 184 aa11.01□□□□□ -0.65
PTPN1-202ENST00000541713 MT-CO2P00403 227 aa11.01□□□□□ -0.65
PTPN1-202ENST00000541713 GRNP28799 593 aaKnown RBP11.01□□□□□ -0.65
PTPN1-202ENST00000541713 RPL8P62917 257 aaKnown RBP11.01□□□□□ -0.65
PTPN1-202ENST00000541713 DDB2Q92466 427 aa11.01□□□□□ -0.65
PTPN1-202ENST00000541713 RPUSD1Q9UJJ7 312 aaKnown RBP11.01□□□□□ -0.65
PTPN1-202ENST00000541713 PPIAL4EA0A075B759 164 aa11.01□□□□□ -0.65
PTPN1-202ENST00000541713 NKX6-3A6NJ46 265 aa11.01□□□□□ -0.65
PTPN1-202ENST00000541713 PPIAL4DF5H284 164 aa11.01□□□□□ -0.65
PTPN1-202ENST00000541713 GGCTO75223 188 aaKnown RBP11.01□□□□□ -0.65
PTPN1-202ENST00000541713 PPIAL4FP0DN26 164 aa11.01□□□□□ -0.65
PTPN1-202ENST00000541713 BTF3L4Q96K17 158 aa11.01□□□□□ -0.65
PTPN1-202ENST00000541713 SLC35E1Q96K37 410 aa11.01□□□□□ -0.65
PTPN1-202ENST00000541713 TPPP3Q9BW30 176 aa11.01□□□□□ -0.65
PTPN1-202ENST00000541713 TMEM14BQ9NUH8 114 aa11.01□□□□□ -0.65
PTPN1-202ENST00000541713 NDUFB3O43676 98 aa11□□□□□ -0.65
PTPN1-202ENST00000541713 LHBP01229 141 aa11□□□□□ -0.65
PTPN1-202ENST00000541713 ERHP84090 104 aaKnown RBP11□□□□□ -0.65
PTPN1-202ENST00000541713 VWC2Q2TAL6 325 aa11□□□□□ -0.65
PTPN1-202ENST00000541713 ZNF788Q6ZQV5 615 aa11□□□□□ -0.65
PTPN1-202ENST00000541713 ZFYVE26Q68DK2 2539 aa11□□□□□ -0.65
PTPN1-202ENST00000541713 FCN3O75636 299 aa11□□□□□ -0.65
PTPN1-202ENST00000541713 WT1-ASQ06250 92 aa11□□□□□ -0.65
PTPN1-202ENST00000541713 FNDC4Q9H6D8 234 aaPredicted RBP11□□□□□ -0.65
PTPN1-202ENST00000541713 ZNF430Q9H8G1 570 aaPredicted RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms